Gene annotation
Transcriptome id Sobic.008G104000.2,Sobic.008G104000.1,Sobic.008G104000.3
Synonym 3, CYCA2, Sb08g015590
Functional annotation cyclin, putative, expressed
UniProt A0A1Z5R618 , A0A1B6PCU6 , A0A1Z5R730
Pfam PF02984 PF00134
Panther DB PTHR10177 PTHR10177:SF212
NCBI CDD KOG0654; G2/Mitotic-specific cyclin A KOG0653Cyclin B and related kinase-activating proteins
KEGG Orthology K06627; cyclin-A
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT1G15570 : CYCLIN A2;3,cyclin a2;1
RAP-DB (Rice) LOC_Os12g31810.1 : cyclin, putative, expressed
MaizeGDB (Corn) Zm00025a054188
Brachypodium KQJ86639
Barley HORVU3Hr1G114440.22 , HORVU3Hr1G114440.23 , HORVU3Hr1G114440.20 , HORVU3Hr1G114440.21 , HORVU3Hr1G114440.24 , HORVU3Hr1G114440.25 , HORVU3Hr1G114440.3 , HORVU3Hr1G114440.1 , HORVU3Hr1G114440.7 , HORVU3Hr1G114440.6 , HORVU3Hr1G114440.5 , HORVU3Hr1G114440.4 , HORVU3Hr1G114440.9 , HORVU3Hr1G114440.8 , HORVU3Hr1G114440.13 , HORVU3Hr1G114440.11 , HORVU3Hr1G114440.17 , HORVU3Hr1G114440.16 , HORVU3Hr1G114440.15 , HORVU3Hr1G114440.14 , HORVU3Hr1G114440.18 , HORVU3Hr1G114440.19
Wheat TraesCS3D02G529100 , TraesCS3A02G523600 , TraesCSU02G054300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G423700 endonuclease, putative, expressed K08991: crossover junction endonuclease MUS81
2 Sobic.004G241300 kinesin motor domain containing protein, putative, expressed K10395: kinesin family member 4
3 Sobic.010G253200 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
4 Sobic.010G182000 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6
5 Sobic.002G420100 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
6 Sobic.001G126800 WD domain, G-beta repeat domain containing protein, expressed K11790: DTL, CDT2, denticleless
7 Sobic.001G248400 expressed protein -
8 Sobic.008G156600 Leucine Rich Repeat family protein, expressed -
9 Sobic.008G171900 kinesin motor domain containing protein, putative, expressed K10406: kinesin family member C2/C3
10 Sobic.008G140600 targeting protein for Xklp2 containing protein, expressed -
11 Sobic.009G163100 kinesin motor domain containing protein, putative, expressed K10403: kinesin family member 22
12 Sobic.003G200000 respiratory burst oxidase, putative, expressed -
13 Sobic.009G220700 - -
14 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
15 Sobic.003G293400 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
16 Sobic.004G261800 sugar-responsive gene(PubMedID : 25496467)@pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
17 Sobic.001G131900 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
18 Sobic.008G073500 AAA-type ATPase family protein, putative, expressed -
19 Sobic.002G186200 ASC1, putative, expressed K04710: CERS1_2_3_4, ceramide synthetase
20 Sobic.010G038200 CDT1A - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1


Gene co-expression network
sample Sobic008G104000 Sobic008G104000 Sobic003G423700 Sobic003G423700 Sobic008G104000--Sobic003G423700 Sobic004G241300 Sobic004G241300 Sobic008G104000--Sobic004G241300 Sobic010G253200 Sobic010G253200 Sobic008G104000--Sobic010G253200 Sobic010G182000 Sobic010G182000 Sobic008G104000--Sobic010G182000 Sobic002G420100 Sobic002G420100 Sobic008G104000--Sobic002G420100 Sobic001G126800 Sobic001G126800 Sobic008G104000--Sobic001G126800 Sobic001G248400 Sobic001G248400 Sobic008G104000--Sobic001G248400 Sobic008G156600 Sobic008G156600 Sobic008G104000--Sobic008G156600 Sobic008G171900 Sobic008G171900 Sobic008G104000--Sobic008G171900 Sobic003G423700--Sobic001G126800 Sobic003G423700--Sobic004G241300 Sobic003G423700--Sobic008G104000 Sobic003G423700--Sobic008G156600 Sobic003G423700--Sobic002G420100 Sobic009G163100 Sobic009G163100 Sobic003G423700--Sobic009G163100 Sobic003G423700--Sobic010G182000 Sobic003G423700--Sobic008G171900 Sobic003G423700--Sobic010G253200 Sobic004G241300--Sobic008G171900 Sobic004G241300--Sobic008G156600 Sobic004G241300--Sobic009G163100 Sobic004G241300--Sobic003G423700 Sobic001G435700 Sobic001G435700 Sobic004G241300--Sobic001G435700 Sobic005G020600 Sobic005G020600 Sobic004G241300--Sobic005G020600 Sobic004G241300--Sobic002G420100 Sobic004G241300--Sobic010G253200 Sobic002G172401 Sobic002G172401 Sobic004G241300--Sobic002G172401 Sobic010G253200--Sobic002G420100 Sobic010G253200--Sobic004G241300 Sobic010G253200--Sobic003G423700 Sobic010G253200--Sobic008G104000 Sobic009G042000 Sobic009G042000 Sobic010G253200--Sobic009G042000 Sobic002G186200 Sobic002G186200 Sobic010G253200--Sobic002G186200 Sobic004G261800 Sobic004G261800 Sobic010G253200--Sobic004G261800 Sobic008G073500 Sobic008G073500 Sobic010G253200--Sobic008G073500 Sobic002G308000 Sobic002G308000 Sobic010G253200--Sobic002G308000 Sobic010G182000--Sobic002G420100 Sobic010G182000--Sobic003G423700 Sobic010G182000--Sobic008G156600 Sobic010G182000--Sobic008G104000 Sobic001G072000 Sobic001G072000 Sobic010G182000--Sobic001G072000 Sobic010G182000--Sobic009G163100 Sobic001G400000 Sobic001G400000 Sobic010G182000--Sobic001G400000 Sobic010G182000--Sobic002G172401 Sobic005G050400 Sobic005G050400 Sobic010G182000--Sobic005G050400 Sobic002G420100--Sobic010G253200 Sobic002G420100--Sobic010G182000 Sobic002G420100--Sobic004G241300 Sobic002G420100--Sobic003G423700 Sobic002G420100--Sobic008G156600 Sobic003G293400 Sobic003G293400 Sobic002G420100--Sobic003G293400 Sobic001G131900 Sobic001G131900 Sobic002G420100--Sobic001G131900 Sobic002G420100--Sobic001G400000 Sobic002G420100--Sobic008G104000 Sobic001G126800--Sobic003G423700 Sobic001G126800--Sobic004G241300 Sobic001G126800--Sobic008G104000 Sobic001G126800--Sobic002G420100 Sobic001G126800--Sobic001G248400 Sobic001G126800--Sobic010G182000 Sobic001G126800--Sobic002G186200 Sobic009G214500 Sobic009G214500 Sobic001G126800--Sobic009G214500 Sobic001G126800--Sobic010G253200 Sobic010G038200 Sobic010G038200 Sobic001G248400--Sobic010G038200 Sobic001G248400--Sobic008G104000 Sobic008G004900 Sobic008G004900 Sobic001G248400--Sobic008G004900 Sobic001G248400--Sobic001G126800 Sobic001G248400--Sobic002G308000 Sobic001G248400--Sobic003G423700 Sobic010G009700 Sobic010G009700 Sobic001G248400--Sobic010G009700 Sobic004G213400 Sobic004G213400 Sobic001G248400--Sobic004G213400 Sobic002G390800 Sobic002G390800 Sobic001G248400--Sobic002G390800 Sobic008G156600--Sobic009G163100 Sobic008G156600--Sobic005G050400 Sobic008G156600--Sobic001G072000 Sobic001G112600 Sobic001G112600 Sobic008G156600--Sobic001G112600 Sobic008G156600--Sobic005G020600 Sobic008G156600--Sobic008G171900 Sobic008G156600--Sobic004G241300 Sobic004G007400 Sobic004G007400 Sobic008G156600--Sobic004G007400 Sobic001G322400 Sobic001G322400 Sobic008G156600--Sobic001G322400 Sobic002G299500 Sobic002G299500 Sobic008G171900--Sobic002G299500 Sobic008G171900--Sobic009G163100 Sobic008G171900--Sobic004G241300 Sobic008G171900--Sobic001G435700 Sobic008G171900--Sobic008G156600 Sobic008G171900--Sobic005G020600 Sobic003G376900 Sobic003G376900 Sobic008G171900--Sobic003G376900 Sobic008G007600 Sobic008G007600 Sobic008G171900--Sobic008G007600 Sobic001G385300 Sobic001G385300 Sobic008G171900--Sobic001G385300
Octagon: transcription factors


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