Gene annotation
Transcriptome id Sobic.001G126800.1
Synonym Sb01g011110
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5WNV5
Pfam PF00400
Panther DB PTHR22852
NCBI CDD KOG0265; U5 snRNP-specific protein-like factor and related proteins
KEGG Orthology K11790; DTL, CDT2, denticleless
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G27640 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os03g49200.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a017061 , Zm00025a007709
Brachypodium PNT74276 , KQK13669
Barley HORVU4Hr1G005810.14 , HORVU4Hr1G005810.15 , HORVU4Hr1G005810.16 , HORVU4Hr1G005810.17 , HORVU4Hr1G005810.10 , HORVU4Hr1G005810.11 , HORVU4Hr1G005810.12 , HORVU4Hr1G005810.13 , HORVU4Hr1G005810.18 , HORVU4Hr1G005810.19 , HORVU4Hr1G005810.8 , HORVU4Hr1G005810.9 , HORVU4Hr1G005810.6 , HORVU4Hr1G005810.7 , HORVU4Hr1G005810.4 , HORVU4Hr1G005810.5 , HORVU4Hr1G005810.2 , HORVU4Hr1G005810.1 , HORVU4Hr1G005810.28 , HORVU4Hr1G005810.20 , HORVU4Hr1G005810.23 , HORVU4Hr1G005810.22 , HORVU4Hr1G005810.25 , HORVU4Hr1G005810.24 , HORVU4Hr1G005810.27 , HORVU4Hr1G005810.26
Wheat TraesCS4B02G037200 , TraesCS4D02G034500 , TraesCS4D02G034500 , TraesCS4A02G276500 , TraesCS4A02G276500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G423700 endonuclease, putative, expressed K08991: crossover junction endonuclease MUS81
2 Sobic.004G241300 kinesin motor domain containing protein, putative, expressed K10395: kinesin family member 4
3 Sobic.008G104000 cyclin, putative, expressed K06627: cyclin-A
4 Sobic.002G420100 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
5 Sobic.001G248400 expressed protein -
6 Sobic.010G182000 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6
7 Sobic.002G186200 ASC1, putative, expressed K04710: CERS1_2_3_4, ceramide synthetase
8 Sobic.009G214500 IQ calmodulin-binding motif domain containing protein, expressed -
9 Sobic.010G253200 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
10 Sobic.004G261800 sugar-responsive gene(PubMedID : 25496467)@pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
11 Sobic.008G156600 Leucine Rich Repeat family protein, expressed -
12 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
13 Sobic.010G038200 CDT1A - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
14 Sobic.007G102300 formin, putative, expressed -
15 Sobic.002G172401 - K07904: Ras-related protein Rab-11A
16 Sobic.009G163100 kinesin motor domain containing protein, putative, expressed K10403: kinesin family member 22
17 Sobic.008G171900 kinesin motor domain containing protein, putative, expressed K10406: kinesin family member C2/C3
18 Sobic.001G352800 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
19 Sobic.001G323400 expressed protein -
20 Sobic.003G293400 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase


Gene co-expression network
sample Sobic001G126800 Sobic001G126800 Sobic003G423700 Sobic003G423700 Sobic001G126800--Sobic003G423700 Sobic004G241300 Sobic004G241300 Sobic001G126800--Sobic004G241300 Sobic008G104000 Sobic008G104000 Sobic001G126800--Sobic008G104000 Sobic002G420100 Sobic002G420100 Sobic001G126800--Sobic002G420100 Sobic001G248400 Sobic001G248400 Sobic001G126800--Sobic001G248400 Sobic010G182000 Sobic010G182000 Sobic001G126800--Sobic010G182000 Sobic002G186200 Sobic002G186200 Sobic001G126800--Sobic002G186200 Sobic009G214500 Sobic009G214500 Sobic001G126800--Sobic009G214500 Sobic010G253200 Sobic010G253200 Sobic001G126800--Sobic010G253200 Sobic003G423700--Sobic001G126800 Sobic003G423700--Sobic004G241300 Sobic003G423700--Sobic008G104000 Sobic008G156600 Sobic008G156600 Sobic003G423700--Sobic008G156600 Sobic003G423700--Sobic002G420100 Sobic009G163100 Sobic009G163100 Sobic003G423700--Sobic009G163100 Sobic003G423700--Sobic010G182000 Sobic008G171900 Sobic008G171900 Sobic003G423700--Sobic008G171900 Sobic003G423700--Sobic010G253200 Sobic004G241300--Sobic008G171900 Sobic004G241300--Sobic008G156600 Sobic004G241300--Sobic009G163100 Sobic004G241300--Sobic003G423700 Sobic001G435700 Sobic001G435700 Sobic004G241300--Sobic001G435700 Sobic005G020600 Sobic005G020600 Sobic004G241300--Sobic005G020600 Sobic004G241300--Sobic002G420100 Sobic004G241300--Sobic010G253200 Sobic002G172401 Sobic002G172401 Sobic004G241300--Sobic002G172401 Sobic008G104000--Sobic003G423700 Sobic008G104000--Sobic004G241300 Sobic008G104000--Sobic010G253200 Sobic008G104000--Sobic010G182000 Sobic008G104000--Sobic002G420100 Sobic008G104000--Sobic001G126800 Sobic008G104000--Sobic001G248400 Sobic008G104000--Sobic008G156600 Sobic008G104000--Sobic008G171900 Sobic002G420100--Sobic010G253200 Sobic002G420100--Sobic010G182000 Sobic002G420100--Sobic004G241300 Sobic002G420100--Sobic003G423700 Sobic002G420100--Sobic008G156600 Sobic003G293400 Sobic003G293400 Sobic002G420100--Sobic003G293400 Sobic001G131900 Sobic001G131900 Sobic002G420100--Sobic001G131900 Sobic001G400000 Sobic001G400000 Sobic002G420100--Sobic001G400000 Sobic002G420100--Sobic008G104000 Sobic010G038200 Sobic010G038200 Sobic001G248400--Sobic010G038200 Sobic001G248400--Sobic008G104000 Sobic008G004900 Sobic008G004900 Sobic001G248400--Sobic008G004900 Sobic001G248400--Sobic001G126800 Sobic002G308000 Sobic002G308000 Sobic001G248400--Sobic002G308000 Sobic001G248400--Sobic003G423700 Sobic010G009700 Sobic010G009700 Sobic001G248400--Sobic010G009700 Sobic004G213400 Sobic004G213400 Sobic001G248400--Sobic004G213400 Sobic002G390800 Sobic002G390800 Sobic001G248400--Sobic002G390800 Sobic010G182000--Sobic002G420100 Sobic010G182000--Sobic003G423700 Sobic010G182000--Sobic008G156600 Sobic010G182000--Sobic008G104000 Sobic001G072000 Sobic001G072000 Sobic010G182000--Sobic001G072000 Sobic010G182000--Sobic009G163100 Sobic010G182000--Sobic001G400000 Sobic010G182000--Sobic002G172401 Sobic005G050400 Sobic005G050400 Sobic010G182000--Sobic005G050400 Sobic004G261800 Sobic004G261800 Sobic002G186200--Sobic004G261800 Sobic002G186200--Sobic003G423700 Sobic002G186200--Sobic010G253200 Sobic002G186200--Sobic002G420100 Sobic002G186200--Sobic004G241300 Sobic002G186200--Sobic001G126800 Sobic002G186200--Sobic008G156600 Sobic003G013700 Sobic003G013700 Sobic002G186200--Sobic003G013700 Sobic002G186200--Sobic001G400000 Sobic007G102300 Sobic007G102300 Sobic009G214500--Sobic007G102300 Sobic001G385300 Sobic001G385300 Sobic009G214500--Sobic001G385300 Sobic007G102000 Sobic007G102000 Sobic009G214500--Sobic007G102000 Sobic009G214500--Sobic009G163100 Sobic001G327100 Sobic001G327100 Sobic009G214500--Sobic001G327100 Sobic001G380700 Sobic001G380700 Sobic009G214500--Sobic001G380700 Sobic003G376900 Sobic003G376900 Sobic009G214500--Sobic003G376900 Sobic009G214500--Sobic004G241300 Sobic009G214500--Sobic003G423700 Sobic010G253200--Sobic002G420100 Sobic010G253200--Sobic004G241300 Sobic010G253200--Sobic003G423700 Sobic010G253200--Sobic008G104000 Sobic009G042000 Sobic009G042000 Sobic010G253200--Sobic009G042000 Sobic010G253200--Sobic002G186200 Sobic010G253200--Sobic004G261800 Sobic008G073500 Sobic008G073500 Sobic010G253200--Sobic008G073500 Sobic010G253200--Sobic002G308000
Octagon: transcription factors


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