Gene annotation
Transcriptome id Sobic.010G253200.3
Synonym ARA1, ISA1, Sb10g029125, ATISA1
Functional annotation GHMP kinases ATP-binding protein, putative, expressed
UniProt A0A1W0VUQ1
Pfam PF08544 PF10509 PF00288
Panther DB PTHR10457 PTHR10457:SF12
NCBI CDD KOG0631; Galactokinase
KEGG Orthology K12446; L-arabinokinase
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT4G16130 : arabinose kinase
RAP-DB (Rice) LOC_Os06g48940.1 : GHMP kinases ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a018380 , Zm00025a034896
Brachypodium KQJ93282 , KQJ93283 , KQK17416 , KQK17415
Barley HORVU7Hr1G096680.21 , HORVU7Hr1G096680.20 , HORVU7Hr1G096680.4 , HORVU7Hr1G096680.5 , HORVU6Hr1G020380.3 , HORVU7Hr1G096680.1 , HORVU6Hr1G020380.7 , HORVU7Hr1G096680.3 , HORVU7Hr1G096680.18 , HORVU7Hr1G096680.19 , HORVU7Hr1G096680.16 , HORVU7Hr1G096680.17 , HORVU7Hr1G096680.14 , HORVU7Hr1G096680.15 , HORVU7Hr1G096680.12 , HORVU7Hr1G096680.13 , HORVU7Hr1G096680.11 , HORVU7Hr1G096680.10 , HORVU6Hr1G020380.8 , HORVU7Hr1G096680.8 , HORVU7Hr1G096680.9 , HORVU6Hr1G020380.1 , HORVU7Hr1G096680.6 , HORVU6Hr1G020380.2 , HORVU6Hr1G020380.5 , HORVU6Hr1G020380.4 , HORVU7Hr1G096680.2 , HORVU6Hr1G020380.6 , HORVU7Hr1G096680.7 , HORVU6Hr1G020380.19 , HORVU6Hr1G020380.18 , HORVU6Hr1G020380.15 , HORVU6Hr1G020380.14 , HORVU6Hr1G020380.17 , HORVU6Hr1G020380.16 , HORVU6Hr1G020380.11 , HORVU6Hr1G020380.10 , HORVU6Hr1G020380.13 , HORVU6Hr1G020380.12
Wheat TraesCS6A02G112800 , TraesCS7B02G317000 , TraesCS7B02G317000 , TraesCS7B02G317000 , TraesCS7A02G417000 , TraesCS6D02G102400 , TraesCS6B02G141400 , TraesCS7D02G410100 , TraesCS7D02G410100 , TraesCS7D02G410100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G420100 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
2 Sobic.004G241300 kinesin motor domain containing protein, putative, expressed K10395: kinesin family member 4
3 Sobic.003G423700 endonuclease, putative, expressed K08991: crossover junction endonuclease MUS81
4 Sobic.008G104000 cyclin, putative, expressed K06627: cyclin-A
5 Sobic.009G042000 expressed protein -
6 Sobic.002G186200 ASC1, putative, expressed K04710: CERS1_2_3_4, ceramide synthetase
7 Sobic.004G261800 sugar-responsive gene(PubMedID : 25496467)@pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
8 Sobic.008G073500 AAA-type ATPase family protein, putative, expressed -
9 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
10 Sobic.001G435700 HVA22, putative, expressed K17338: receptor expression-enhancing protein 1/2/3/4
11 Sobic.002G201700 phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
12 Sobic.008G156600 Leucine Rich Repeat family protein, expressed -
13 Sobic.001G529200 no apical meristem protein, putative, expressed -
14 Sobic.003G293400 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
15 Sobic.001G131900 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
16 Sobic.009G025700 cycloeucalenol cycloisomerase, putative, expressed K08246: cycloeucalenol cycloisomerase
17 Sobic.001G400000 NAD dependent epimerase/dehydratase family protein, putative, expressed K12448: UXE, UDP-arabinose 4-epimerase
18 Sobic.009G163100 kinesin motor domain containing protein, putative, expressed K10403: kinesin family member 22
19 Sobic.007G102000 formin-like protein 13, putative, expressed -
20 Sobic.001G126800 WD domain, G-beta repeat domain containing protein, expressed K11790: DTL, CDT2, denticleless


Gene co-expression network
sample Sobic010G253200 Sobic010G253200 Sobic002G420100 Sobic002G420100 Sobic010G253200--Sobic002G420100 Sobic004G241300 Sobic004G241300 Sobic010G253200--Sobic004G241300 Sobic003G423700 Sobic003G423700 Sobic010G253200--Sobic003G423700 Sobic008G104000 Sobic008G104000 Sobic010G253200--Sobic008G104000 Sobic009G042000 Sobic009G042000 Sobic010G253200--Sobic009G042000 Sobic002G186200 Sobic002G186200 Sobic010G253200--Sobic002G186200 Sobic004G261800 Sobic004G261800 Sobic010G253200--Sobic004G261800 Sobic008G073500 Sobic008G073500 Sobic010G253200--Sobic008G073500 Sobic002G308000 Sobic002G308000 Sobic010G253200--Sobic002G308000 Sobic002G420100--Sobic010G253200 Sobic010G182000 Sobic010G182000 Sobic002G420100--Sobic010G182000 Sobic002G420100--Sobic004G241300 Sobic002G420100--Sobic003G423700 Sobic008G156600 Sobic008G156600 Sobic002G420100--Sobic008G156600 Sobic003G293400 Sobic003G293400 Sobic002G420100--Sobic003G293400 Sobic001G131900 Sobic001G131900 Sobic002G420100--Sobic001G131900 Sobic001G400000 Sobic001G400000 Sobic002G420100--Sobic001G400000 Sobic002G420100--Sobic008G104000 Sobic008G171900 Sobic008G171900 Sobic004G241300--Sobic008G171900 Sobic004G241300--Sobic008G156600 Sobic009G163100 Sobic009G163100 Sobic004G241300--Sobic009G163100 Sobic004G241300--Sobic003G423700 Sobic001G435700 Sobic001G435700 Sobic004G241300--Sobic001G435700 Sobic005G020600 Sobic005G020600 Sobic004G241300--Sobic005G020600 Sobic004G241300--Sobic002G420100 Sobic004G241300--Sobic010G253200 Sobic002G172401 Sobic002G172401 Sobic004G241300--Sobic002G172401 Sobic001G126800 Sobic001G126800 Sobic003G423700--Sobic001G126800 Sobic003G423700--Sobic004G241300 Sobic003G423700--Sobic008G104000 Sobic003G423700--Sobic008G156600 Sobic003G423700--Sobic002G420100 Sobic003G423700--Sobic009G163100 Sobic003G423700--Sobic010G182000 Sobic003G423700--Sobic008G171900 Sobic003G423700--Sobic010G253200 Sobic008G104000--Sobic003G423700 Sobic008G104000--Sobic004G241300 Sobic008G104000--Sobic010G253200 Sobic008G104000--Sobic010G182000 Sobic008G104000--Sobic002G420100 Sobic008G104000--Sobic001G126800 Sobic001G248400 Sobic001G248400 Sobic008G104000--Sobic001G248400 Sobic008G104000--Sobic008G156600 Sobic008G104000--Sobic008G171900 Sobic007G151500 Sobic007G151500 Sobic009G042000--Sobic007G151500 Sobic009G042000--Sobic010G253200 Sobic009G042000--Sobic003G293400 Sobic009G042000--Sobic004G241300 Sobic002G201700 Sobic002G201700 Sobic009G042000--Sobic002G201700 Sobic009G042000--Sobic008G156600 Sobic009G042000--Sobic002G420100 Sobic009G025700 Sobic009G025700 Sobic009G042000--Sobic009G025700 Sobic009G042000--Sobic003G423700 Sobic002G186200--Sobic004G261800 Sobic002G186200--Sobic003G423700 Sobic002G186200--Sobic010G253200 Sobic002G186200--Sobic002G420100 Sobic002G186200--Sobic004G241300 Sobic002G186200--Sobic001G126800 Sobic002G186200--Sobic008G156600 Sobic003G013700 Sobic003G013700 Sobic002G186200--Sobic003G013700 Sobic002G186200--Sobic001G400000 Sobic004G261800--Sobic003G013700 Sobic004G261800--Sobic002G186200 Sobic007G014700 Sobic007G014700 Sobic004G261800--Sobic007G014700 Sobic004G261800--Sobic010G253200 Sobic004G261800--Sobic002G420100 Sobic004G261800--Sobic002G201700 Sobic001G303900 Sobic001G303900 Sobic004G261800--Sobic001G303900 Sobic004G261800--Sobic003G423700 Sobic004G261800--Sobic008G156600 Sobic007G102000 Sobic007G102000 Sobic008G073500--Sobic007G102000 Sobic008G073500--Sobic010G253200 Sobic008G073500--Sobic009G025700 Sobic005G060100 Sobic005G060100 Sobic008G073500--Sobic005G060100 Sobic001G385300 Sobic001G385300 Sobic008G073500--Sobic001G385300 Sobic007G043700 Sobic007G043700 Sobic008G073500--Sobic007G043700 Sobic008G073500--Sobic001G435700 Sobic009G214500 Sobic009G214500 Sobic008G073500--Sobic009G214500 Sobic008G085950 Sobic008G085950 Sobic008G073500--Sobic008G085950 Sobic002G392400 Sobic002G392400 Sobic002G308000--Sobic002G392400 Sobic007G105700 Sobic007G105700 Sobic002G308000--Sobic007G105700 Sobic001G117900 Sobic001G117900 Sobic002G308000--Sobic001G117900 Sobic001G433600 Sobic001G433600 Sobic002G308000--Sobic001G433600 Sobic002G308000--Sobic003G293400 Sobic002G308000--Sobic010G253200 Sobic002G308000--Sobic001G131900 Sobic007G111300 Sobic007G111300 Sobic002G308000--Sobic007G111300 Sobic002G192900 Sobic002G192900 Sobic002G308000--Sobic002G192900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.