Gene annotation
Transcriptome id Sobic.001G400000.1
Synonym MUR4, Sb01g037860, HSR8, UXE1
Functional annotation NAD dependent epimerase/dehydratase family protein, putative, expressed
UniProt C5WML3
Pfam PF01073
Panther DB PTHR10366 PTHR10366:SF326
NCBI CDD KOG1371; UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase
KEGG Orthology K12448; UXE, UDP-arabinose 4-epimerase
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0006694steroid biosynthetic process GO:00038543-beta-hydroxy-delta5-steroid dehydrogenase activity


Orthologs (automatic annotation)
TAIR AT1G30620 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os08g03570.1 : NAD dependent epimerase/dehydratase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a056399 , Zm00025a052609 , Zm00025a054022 , Zm00025a002088
Brachypodium KQJ94946 , KQJ94944 , KQJ94945
Barley HORVU7Hr1G074300.6 , HORVU7Hr1G074300.8 , HORVU7Hr1G074300.5 , HORVU7Hr1G074300.4 , HORVU7Hr1G074300.7 , HORVU7Hr1G074300.1 , HORVU7Hr1G074300.3 , HORVU7Hr1G074300.2
Wheat TraesCS7B02G210700 , TraesCS7B02G210700 , TraesCS7A02G311100 , TraesCS7D02G307500
Populus PNS97397 , PNS97396 , PNS97395 , PNS97398


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cDNA sequences
Sobic.001G400000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G113600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
2 Sobic.001G112600 Actin(PubMedID : 27325899)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@actin, putative, expressed K10355: actin, other eukaryote
3 Sobic.001G384200 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
4 Sobic.005G050400 syntaxin 6, putative, expressed -
5 Sobic.003G244400 OsFBK1 - F-box domain and kelch repeat containing protein, expressed -
6 Sobic.006G265800 OsFBX154 - F-box domain containing protein, expressed -
7 Sobic.004G007400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
8 Sobic.008G055600 OsFBX430 - F-box domain containing protein, expressed -
9 Sobic.008G156600 Leucine Rich Repeat family protein, expressed -
10 Sobic.004G107100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CID11, putative, expressed -
11 Sobic.009G163100 kinesin motor domain containing protein, putative, expressed K10403: kinesin family member 22
12 Sobic.001G387300 exostosin family domain containing protein, expressed -
13 Sobic.001G342101 - -
14 Sobic.001G072000 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
15 Sobic.009G087100 cyclin-A1, putative, expressed K06627: cyclin-A
16 Sobic.003G441000 rhoGAP domain containing protein, expressed -
17 Sobic.006G134500 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
18 Sobic.004G358000 CAMK_CAMK_like.16 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
19 Sobic.004G298200 Plant VAMP (vesicle-associated membrane protein) family protein(PubMedID : 26465154)@MSP domain containing protein, expressed -
20 Sobic.004G253200 amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2


Gene co-expression network
sample Sobic001G400000 Sobic001G400000 Sobic004G113600 Sobic004G113600 Sobic001G400000--Sobic004G113600 Sobic001G112600 Sobic001G112600 Sobic001G400000--Sobic001G112600 Sobic001G384200 Sobic001G384200 Sobic001G400000--Sobic001G384200 Sobic005G050400 Sobic005G050400 Sobic001G400000--Sobic005G050400 Sobic003G244400 Sobic003G244400 Sobic001G400000--Sobic003G244400 Sobic006G265800 Sobic006G265800 Sobic001G400000--Sobic006G265800 Sobic004G007400 Sobic004G007400 Sobic001G400000--Sobic004G007400 Sobic008G055600 Sobic008G055600 Sobic001G400000--Sobic008G055600 Sobic008G156600 Sobic008G156600 Sobic001G400000--Sobic008G156600 Sobic004G113600--Sobic001G112600 Sobic004G113600--Sobic003G244400 Sobic004G358000 Sobic004G358000 Sobic004G113600--Sobic004G358000 Sobic009G242200 Sobic009G242200 Sobic004G113600--Sobic009G242200 Sobic002G170100 Sobic002G170100 Sobic004G113600--Sobic002G170100 Sobic004G113600--Sobic005G050400 Sobic004G113600--Sobic001G384200 Sobic004G113600--Sobic001G400000 Sobic005G054150 Sobic005G054150 Sobic004G113600--Sobic005G054150 Sobic001G112600--Sobic005G050400 Sobic001G112600--Sobic009G242200 Sobic003G441000 Sobic003G441000 Sobic001G112600--Sobic003G441000 Sobic001G112600--Sobic002G170100 Sobic001G414650 Sobic001G414650 Sobic001G112600--Sobic001G414650 Sobic001G112600--Sobic003G244400 Sobic008G055200 Sobic008G055200 Sobic001G112600--Sobic008G055200 Sobic001G112600--Sobic004G358000 Sobic005G144000 Sobic005G144000 Sobic001G112600--Sobic005G144000 Sobic003G024100 Sobic003G024100 Sobic001G384200--Sobic003G024100 Sobic001G340800 Sobic001G340800 Sobic001G384200--Sobic001G340800 Sobic008G166100 Sobic008G166100 Sobic001G384200--Sobic008G166100 Sobic009G178400 Sobic009G178400 Sobic001G384200--Sobic009G178400 Sobic001G370400 Sobic001G370400 Sobic001G384200--Sobic001G370400 Sobic001G384200--Sobic003G244400 Sobic001G432200 Sobic001G432200 Sobic001G384200--Sobic001G432200 Sobic003G175350 Sobic003G175350 Sobic001G384200--Sobic003G175350 Sobic007G039200 Sobic007G039200 Sobic001G384200--Sobic007G039200 Sobic005G050400--Sobic001G112600 Sobic001G072000 Sobic001G072000 Sobic005G050400--Sobic001G072000 Sobic005G050400--Sobic008G156600 Sobic005G050400--Sobic009G242200 Sobic005G050400--Sobic002G170100 Sobic005G050400--Sobic003G441000 Sobic005G050400--Sobic004G007400 Sobic005G050400--Sobic005G144000 Sobic009G163100 Sobic009G163100 Sobic005G050400--Sobic009G163100 Sobic003G244400--Sobic001G370400 Sobic001G103100 Sobic001G103100 Sobic003G244400--Sobic001G103100 Sobic003G244400--Sobic008G055200 Sobic003G244400--Sobic001G432200 Sobic006G204500 Sobic006G204500 Sobic003G244400--Sobic006G204500 Sobic003G244400--Sobic001G340800 Sobic002G364700 Sobic002G364700 Sobic003G244400--Sobic002G364700 Sobic007G091400 Sobic007G091400 Sobic003G244400--Sobic007G091400 Sobic010G003200 Sobic010G003200 Sobic003G244400--Sobic010G003200 Sobic006G265800--Sobic001G384200 Sobic006G134500 Sobic006G134500 Sobic006G265800--Sobic006G134500 Sobic006G265800--Sobic001G400000 Sobic006G265800--Sobic009G163100 Sobic009G201000 Sobic009G201000 Sobic006G265800--Sobic009G201000 Sobic006G265800--Sobic003G024100 Sobic006G265800--Sobic008G156600 Sobic006G265800--Sobic003G244400 Sobic008G007600 Sobic008G007600 Sobic006G265800--Sobic008G007600 Sobic004G007400--Sobic005G050400 Sobic004G007400--Sobic001G112600 Sobic009G087100 Sobic009G087100 Sobic004G007400--Sobic009G087100 Sobic004G007400--Sobic008G156600 Sobic002G176000 Sobic002G176000 Sobic004G007400--Sobic002G176000 Sobic004G007400--Sobic003G441000 Sobic004G007400--Sobic004G358000 Sobic004G046800 Sobic004G046800 Sobic004G007400--Sobic004G046800 Sobic004G007400--Sobic002G364700 Sobic004G253200 Sobic004G253200 Sobic008G055600--Sobic004G253200 Sobic001G279000 Sobic001G279000 Sobic008G055600--Sobic001G279000 Sobic008G055600--Sobic005G144000 Sobic009G119600 Sobic009G119600 Sobic008G055600--Sobic009G119600 Sobic001G342101 Sobic001G342101 Sobic008G055600--Sobic001G342101 Sobic003G187700 Sobic003G187700 Sobic008G055600--Sobic003G187700 Sobic008G055600--Sobic003G244400 Sobic008G055600--Sobic004G358000 Sobic008G055600--Sobic003G441000 Sobic008G156600--Sobic009G163100 Sobic008G156600--Sobic005G050400 Sobic008G156600--Sobic001G072000 Sobic008G156600--Sobic001G112600 Sobic005G020600 Sobic005G020600 Sobic008G156600--Sobic005G020600 Sobic008G171900 Sobic008G171900 Sobic008G156600--Sobic008G171900 Sobic004G241300 Sobic004G241300 Sobic008G156600--Sobic004G241300 Sobic008G156600--Sobic004G007400 Sobic001G322400 Sobic001G322400 Sobic008G156600--Sobic001G322400
Octagon: transcription factors


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