Gene annotation
Transcriptome id Sobic.004G298200.1,Sobic.004G298200.2
Synonym Sb04g033220
Functional annotation Plant VAMP (vesicle-associated membrane protein) family protein (PubMedID : 26465154)
MSP domain containing protein, expressed
UniProt A0A194YSD3 , C5XS13
Pfam PF00635
Panther DB PTHR10809 PTHR10809:SF42
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005789; endoplasmic reticulum membrane


Orthologs (automatic annotation)
TAIR AT5G47180 : Plant VAMP (vesicle-associated membrane protein) family protein
RAP-DB (Rice) LOC_Os10g40140.1 : MSP domain containing protein, expressed
MaizeGDB (Corn) Zm00025a050443 , Zm00025a020913 , Zm00025a032181
Brachypodium KQK00573
Barley HORVU6Hr1G062050.9 , HORVU6Hr1G062050.8 , HORVU6Hr1G062050.5 , HORVU6Hr1G062050.2 , HORVU6Hr1G062050.1 , HORVU6Hr1G062050.6 , HORVU6Hr1G062050.7 , HORVU6Hr1G062050.4 , HORVU6Hr1G062050.3 , HORVU6Hr1G062050.13 , HORVU6Hr1G062050.12 , HORVU6Hr1G062050.11 , HORVU6Hr1G062050.10
Wheat TraesCS6D02G224100 , TraesCS2B02G214400 , TraesCS6A02G242200 , TraesCS6B02G282300 , TraesCS6B02G282300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G194800 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
2 Sobic.001G112600 Actin(PubMedID : 27325899)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@actin, putative, expressed K10355: actin, other eukaryote
3 Sobic.006G115700 WRKY35, expressed K18835: WRKY transcription factor 2
4 Sobic.002G364700 ZOS7-11 - C2H2 zinc finger protein, expressed -
5 Sobic.003G244400 OsFBK1 - F-box domain and kelch repeat containing protein, expressed -
6 Sobic.008G055200 dirigent, putative, expressed -
7 Sobic.005G050400 syntaxin 6, putative, expressed -
8 Sobic.002G192800 - -
9 Sobic.010G253600 OsFBL18 - F-box domain and LRR containing protein, expressed -
10 Sobic.009G242200 CGMC_MAPKCMGC_2.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
11 Sobic.007G142801 - -
12 Sobic.006G204500 pectinacetylesterase domain containing protein, expressed -
13 Sobic.009G148600 DUF803 domain containing, putative, expressed -
14 Sobic.001G474100 pumilio-family RNA binding repeat domain containing protein, expressed -
15 Sobic.001G432200 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
16 Sobic.001G414650 - K08678: UXS1, UDP-glucuronate decarboxylase
17 Sobic.002G381500 uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed K01087: trehalose 6-phosphate phosphatase
18 Sobic.004G046800 expressed protein -
19 Sobic.007G212500 nodulation protein-related, putative, expressed -
20 Sobic.006G193400 regulatory protein, putative, expressed -


Gene co-expression network
sample Sobic004G298200 Sobic004G298200 Sobic001G194800 Sobic001G194800 Sobic004G298200--Sobic001G194800 Sobic001G112600 Sobic001G112600 Sobic004G298200--Sobic001G112600 Sobic006G115700 Sobic006G115700 Sobic004G298200--Sobic006G115700 Sobic002G364700 Sobic002G364700 Sobic004G298200--Sobic002G364700 Sobic003G244400 Sobic003G244400 Sobic004G298200--Sobic003G244400 Sobic008G055200 Sobic008G055200 Sobic004G298200--Sobic008G055200 Sobic005G050400 Sobic005G050400 Sobic004G298200--Sobic005G050400 Sobic002G192800 Sobic002G192800 Sobic004G298200--Sobic002G192800 Sobic010G253600 Sobic010G253600 Sobic004G298200--Sobic010G253600 Sobic001G194800--Sobic008G055200 Sobic005G176700 Sobic005G176700 Sobic001G194800--Sobic005G176700 Sobic005G000900 Sobic005G000900 Sobic001G194800--Sobic005G000900 Sobic004G050900 Sobic004G050900 Sobic001G194800--Sobic004G050900 Sobic006G017700 Sobic006G017700 Sobic001G194800--Sobic006G017700 Sobic001G194800--Sobic002G364700 Sobic009G182100 Sobic009G182100 Sobic001G194800--Sobic009G182100 Sobic006G017900 Sobic006G017900 Sobic001G194800--Sobic006G017900 Sobic002G182701 Sobic002G182701 Sobic001G194800--Sobic002G182701 Sobic001G112600--Sobic005G050400 Sobic009G242200 Sobic009G242200 Sobic001G112600--Sobic009G242200 Sobic003G441000 Sobic003G441000 Sobic001G112600--Sobic003G441000 Sobic002G170100 Sobic002G170100 Sobic001G112600--Sobic002G170100 Sobic001G414650 Sobic001G414650 Sobic001G112600--Sobic001G414650 Sobic001G112600--Sobic003G244400 Sobic001G112600--Sobic008G055200 Sobic004G358000 Sobic004G358000 Sobic001G112600--Sobic004G358000 Sobic005G144000 Sobic005G144000 Sobic001G112600--Sobic005G144000 Sobic003G297100 Sobic003G297100 Sobic006G115700--Sobic003G297100 Sobic007G142801 Sobic007G142801 Sobic006G115700--Sobic007G142801 Sobic001G135800 Sobic001G135800 Sobic006G115700--Sobic001G135800 Sobic006G115700--Sobic002G364700 Sobic009G061601 Sobic009G061601 Sobic006G115700--Sobic009G061601 Sobic001G432200 Sobic001G432200 Sobic006G115700--Sobic001G432200 Sobic006G115700--Sobic005G176700 Sobic006G204500 Sobic006G204500 Sobic006G115700--Sobic006G204500 Sobic001G370400 Sobic001G370400 Sobic006G115700--Sobic001G370400 Sobic002G364700--Sobic006G204500 Sobic002G364700--Sobic005G176700 Sobic002G364700--Sobic001G370400 Sobic002G364700--Sobic006G115700 Sobic008G020800 Sobic008G020800 Sobic002G364700--Sobic008G020800 Sobic002G307400 Sobic002G307400 Sobic002G364700--Sobic002G307400 Sobic004G100300 Sobic004G100300 Sobic002G364700--Sobic004G100300 Sobic003G070400 Sobic003G070400 Sobic002G364700--Sobic003G070400 Sobic006G070032 Sobic006G070032 Sobic002G364700--Sobic006G070032 Sobic003G244400--Sobic001G370400 Sobic001G103100 Sobic001G103100 Sobic003G244400--Sobic001G103100 Sobic003G244400--Sobic008G055200 Sobic003G244400--Sobic001G432200 Sobic003G244400--Sobic006G204500 Sobic001G340800 Sobic001G340800 Sobic003G244400--Sobic001G340800 Sobic003G244400--Sobic002G364700 Sobic007G091400 Sobic007G091400 Sobic003G244400--Sobic007G091400 Sobic010G003200 Sobic010G003200 Sobic003G244400--Sobic010G003200 Sobic008G055200--Sobic005G176700 Sobic005G148000 Sobic005G148000 Sobic008G055200--Sobic005G148000 Sobic005G040100 Sobic005G040100 Sobic008G055200--Sobic005G040100 Sobic001G192300 Sobic001G192300 Sobic008G055200--Sobic001G192300 Sobic004G094400 Sobic004G094400 Sobic008G055200--Sobic004G094400 Sobic001G143700 Sobic001G143700 Sobic008G055200--Sobic001G143700 Sobic002G006200 Sobic002G006200 Sobic008G055200--Sobic002G006200 Sobic002G097300 Sobic002G097300 Sobic008G055200--Sobic002G097300 Sobic008G138400 Sobic008G138400 Sobic008G055200--Sobic008G138400 Sobic005G050400--Sobic001G112600 Sobic001G072000 Sobic001G072000 Sobic005G050400--Sobic001G072000 Sobic008G156600 Sobic008G156600 Sobic005G050400--Sobic008G156600 Sobic005G050400--Sobic009G242200 Sobic005G050400--Sobic002G170100 Sobic005G050400--Sobic003G441000 Sobic004G007400 Sobic004G007400 Sobic005G050400--Sobic004G007400 Sobic005G050400--Sobic005G144000 Sobic009G163100 Sobic009G163100 Sobic005G050400--Sobic009G163100 Sobic002G384900 Sobic002G384900 Sobic002G192800--Sobic002G384900 Sobic002G192800--Sobic006G017900 Sobic002G192800--Sobic006G017700 Sobic002G192800--Sobic002G182701 Sobic001G211700 Sobic001G211700 Sobic002G192800--Sobic001G211700 Sobic002G192800--Sobic004G100300 Sobic005G221675 Sobic005G221675 Sobic002G192800--Sobic005G221675 Sobic004G046700 Sobic004G046700 Sobic002G192800--Sobic004G046700 Sobic005G140900 Sobic005G140900 Sobic002G192800--Sobic005G140900 Sobic010G238300 Sobic010G238300 Sobic010G253600--Sobic010G238300 Sobic010G253600--Sobic001G135800 Sobic010G253600--Sobic007G142801 Sobic010G142401 Sobic010G142401 Sobic010G253600--Sobic010G142401 Sobic010G253600--Sobic006G115700 Sobic010G010201 Sobic010G010201 Sobic010G253600--Sobic010G010201 Sobic001G172100 Sobic001G172100 Sobic010G253600--Sobic001G172100 Sobic010G253600--Sobic003G297100 Sobic005G002100 Sobic005G002100 Sobic010G253600--Sobic005G002100
Octagon: transcription factors


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