Gene annotation
Transcriptome id Sobic.009G087100.2,Sobic.009G087100.3,Sobic.009G087100.1
Synonym 1, Sb09g008020, CYCA1
Functional annotation cyclin-A1, putative, expressed
UniProt A0A1Z5R1M5 , A0A1B6P7G0 , A0A1Z5R2N1
Pfam PF02984 PF00134
Panther DB PTHR10177 PTHR10177:SF203
NCBI CDD KOG0654; G2/Mitotic-specific cyclin A
KEGG Orthology K06627; cyclin-A
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT1G44110 : Cyclin A1;1
RAP-DB (Rice) LOC_Os01g13260.1,LOC_Os05g14730.1 : cyclin-A1, putative, expressed
MaizeGDB (Corn) Zm00025a037558
Brachypodium -
Barley -
Wheat TraesCS1D02G134100 , TraesCS1D02G134100 , TraesCS1D02G134100 , TraesCS1B02G151800 , TraesCS1B02G151800 , TraesCS1B02G151800 , TraesCS1B02G151800 , TraesCS1A02G138300 , TraesCS1A02G138300 , TraesCS1A02G138300 , TraesCS1A02G138300
Populus PNT48454 , PNT37316


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G055600 OsFBX430 - F-box domain containing protein, expressed -
2 Sobic.001G112600 Actin(PubMedID : 27325899)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@actin, putative, expressed K10355: actin, other eukaryote
3 Sobic.004G007400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
4 Sobic.001G279000 OsFBX382 - F-box domain containing protein, expressed -
5 Sobic.005G136100 - -
6 Sobic.002G364700 ZOS7-11 - C2H2 zinc finger protein, expressed -
7 Sobic.003G244400 OsFBK1 - F-box domain and kelch repeat containing protein, expressed -
8 Sobic.001G194800 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
9 Sobic.007G074300 MATE efflux family protein, putative, expressed -
10 Sobic.001G414650 - K08678: UXS1, UDP-glucuronate decarboxylase
11 Sobic.001G103100 DNA binding protein, putative, expressed -
12 Sobic.001G370400 aberrant pollen transmission 1, putative, expressed -
13 Sobic.002G176000 membrane protein, putative, expressed -
14 Sobic.004G358000 CAMK_CAMK_like.16 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
15 Sobic.005G050400 syntaxin 6, putative, expressed -
16 Sobic.006G115700 WRKY35, expressed K18835: WRKY transcription factor 2
17 Sobic.004G050900 OsFBX248 - F-box domain containing protein, expressed -
18 Sobic.009G242200 CGMC_MAPKCMGC_2.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
19 Sobic.004G094400 - -
20 Sobic.002G381500 uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed K01087: trehalose 6-phosphate phosphatase


Gene co-expression network
sample Sobic009G087100 Sobic009G087100 Sobic008G055600 Sobic008G055600 Sobic009G087100--Sobic008G055600 Sobic001G112600 Sobic001G112600 Sobic009G087100--Sobic001G112600 Sobic004G007400 Sobic004G007400 Sobic009G087100--Sobic004G007400 Sobic001G279000 Sobic001G279000 Sobic009G087100--Sobic001G279000 Sobic005G136100 Sobic005G136100 Sobic009G087100--Sobic005G136100 Sobic002G364700 Sobic002G364700 Sobic009G087100--Sobic002G364700 Sobic003G244400 Sobic003G244400 Sobic009G087100--Sobic003G244400 Sobic001G194800 Sobic001G194800 Sobic009G087100--Sobic001G194800 Sobic007G074300 Sobic007G074300 Sobic009G087100--Sobic007G074300 Sobic004G253200 Sobic004G253200 Sobic008G055600--Sobic004G253200 Sobic008G055600--Sobic001G279000 Sobic005G144000 Sobic005G144000 Sobic008G055600--Sobic005G144000 Sobic009G119600 Sobic009G119600 Sobic008G055600--Sobic009G119600 Sobic001G342101 Sobic001G342101 Sobic008G055600--Sobic001G342101 Sobic003G187700 Sobic003G187700 Sobic008G055600--Sobic003G187700 Sobic008G055600--Sobic003G244400 Sobic004G358000 Sobic004G358000 Sobic008G055600--Sobic004G358000 Sobic003G441000 Sobic003G441000 Sobic008G055600--Sobic003G441000 Sobic005G050400 Sobic005G050400 Sobic001G112600--Sobic005G050400 Sobic009G242200 Sobic009G242200 Sobic001G112600--Sobic009G242200 Sobic001G112600--Sobic003G441000 Sobic002G170100 Sobic002G170100 Sobic001G112600--Sobic002G170100 Sobic001G414650 Sobic001G414650 Sobic001G112600--Sobic001G414650 Sobic001G112600--Sobic003G244400 Sobic008G055200 Sobic008G055200 Sobic001G112600--Sobic008G055200 Sobic001G112600--Sobic004G358000 Sobic001G112600--Sobic005G144000 Sobic004G007400--Sobic005G050400 Sobic004G007400--Sobic001G112600 Sobic004G007400--Sobic009G087100 Sobic008G156600 Sobic008G156600 Sobic004G007400--Sobic008G156600 Sobic002G176000 Sobic002G176000 Sobic004G007400--Sobic002G176000 Sobic004G007400--Sobic003G441000 Sobic004G007400--Sobic004G358000 Sobic004G046800 Sobic004G046800 Sobic004G007400--Sobic004G046800 Sobic004G007400--Sobic002G364700 Sobic003G013900 Sobic003G013900 Sobic001G279000--Sobic003G013900 Sobic002G380300 Sobic002G380300 Sobic001G279000--Sobic002G380300 Sobic008G176500 Sobic008G176500 Sobic001G279000--Sobic008G176500 Sobic003G019450 Sobic003G019450 Sobic001G279000--Sobic003G019450 Sobic007G091400 Sobic007G091400 Sobic001G279000--Sobic007G091400 Sobic006G236400 Sobic006G236400 Sobic001G279000--Sobic006G236400 Sobic001G370400 Sobic001G370400 Sobic001G279000--Sobic001G370400 Sobic010G016200 Sobic010G016200 Sobic001G279000--Sobic010G016200 Sobic003G304600 Sobic003G304600 Sobic001G279000--Sobic003G304600 Sobic008G103250 Sobic008G103250 Sobic005G136100--Sobic008G103250 Sobic005G136100--Sobic001G370400 Sobic004G014200 Sobic004G014200 Sobic005G136100--Sobic004G014200 Sobic001G103100 Sobic001G103100 Sobic005G136100--Sobic001G103100 Sobic005G170300 Sobic005G170300 Sobic005G136100--Sobic005G170300 Sobic001G402900 Sobic001G402900 Sobic005G136100--Sobic001G402900 Sobic004G120600 Sobic004G120600 Sobic005G136100--Sobic004G120600 Sobic001G163666 Sobic001G163666 Sobic005G136100--Sobic001G163666 Sobic010G098932 Sobic010G098932 Sobic005G136100--Sobic010G098932 Sobic006G204500 Sobic006G204500 Sobic002G364700--Sobic006G204500 Sobic005G176700 Sobic005G176700 Sobic002G364700--Sobic005G176700 Sobic002G364700--Sobic001G370400 Sobic006G115700 Sobic006G115700 Sobic002G364700--Sobic006G115700 Sobic008G020800 Sobic008G020800 Sobic002G364700--Sobic008G020800 Sobic002G307400 Sobic002G307400 Sobic002G364700--Sobic002G307400 Sobic004G100300 Sobic004G100300 Sobic002G364700--Sobic004G100300 Sobic003G070400 Sobic003G070400 Sobic002G364700--Sobic003G070400 Sobic006G070032 Sobic006G070032 Sobic002G364700--Sobic006G070032 Sobic003G244400--Sobic001G370400 Sobic003G244400--Sobic001G103100 Sobic003G244400--Sobic008G055200 Sobic001G432200 Sobic001G432200 Sobic003G244400--Sobic001G432200 Sobic003G244400--Sobic006G204500 Sobic001G340800 Sobic001G340800 Sobic003G244400--Sobic001G340800 Sobic003G244400--Sobic002G364700 Sobic003G244400--Sobic007G091400 Sobic010G003200 Sobic010G003200 Sobic003G244400--Sobic010G003200 Sobic001G194800--Sobic008G055200 Sobic001G194800--Sobic005G176700 Sobic005G000900 Sobic005G000900 Sobic001G194800--Sobic005G000900 Sobic004G050900 Sobic004G050900 Sobic001G194800--Sobic004G050900 Sobic006G017700 Sobic006G017700 Sobic001G194800--Sobic006G017700 Sobic001G194800--Sobic002G364700 Sobic009G182100 Sobic009G182100 Sobic001G194800--Sobic009G182100 Sobic006G017900 Sobic006G017900 Sobic001G194800--Sobic006G017900 Sobic002G182701 Sobic002G182701 Sobic001G194800--Sobic002G182701 Sobic007G082100 Sobic007G082100 Sobic007G074300--Sobic007G082100 Sobic007G074300--Sobic003G070400 Sobic007G031200 Sobic007G031200 Sobic007G074300--Sobic007G031200 Sobic007G081100 Sobic007G081100 Sobic007G074300--Sobic007G081100 Sobic003G191200 Sobic003G191200 Sobic007G074300--Sobic003G191200 Sobic007G204200 Sobic007G204200 Sobic007G074300--Sobic007G204200 Sobic007G074300--Sobic004G100300 Sobic002G404600 Sobic002G404600 Sobic007G074300--Sobic002G404600 Sobic007G074300--Sobic002G182701
Octagon: transcription factors


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