Gene annotation
Transcriptome id Sobic.004G007400.7,Sobic.004G007400.5,Sobic.004G007400.6,Sobic.004G007400.4,Sobic.004G007400.3
Synonym Sb04g000820
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
CCT/B-box zinc finger protein, putative, expressed
UniProt A0A1Z5RL55 , A0A1Z5RKC0 , A0A1Z5RKB6 , A0A1Z5RKC7 , A0A1Z5RLE3
Pfam PF06203
Panther DB PTHR31717 PTHR31717:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G21880 : B-box type zinc finger protein with CCT domain
RAP-DB (Rice) LOC_Os02g01990.1 : CCT motif family protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G050400 syntaxin 6, putative, expressed -
2 Sobic.001G112600 Actin(PubMedID : 27325899)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@actin, putative, expressed K10355: actin, other eukaryote
3 Sobic.009G087100 cyclin-A1, putative, expressed K06627: cyclin-A
4 Sobic.008G156600 Leucine Rich Repeat family protein, expressed -
5 Sobic.002G176000 membrane protein, putative, expressed -
6 Sobic.003G441000 rhoGAP domain containing protein, expressed -
7 Sobic.004G358000 CAMK_CAMK_like.16 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
8 Sobic.004G046800 expressed protein -
9 Sobic.002G364700 ZOS7-11 - C2H2 zinc finger protein, expressed -
10 Sobic.004G113600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
11 Sobic.001G194800 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
12 Sobic.001G400000 NAD dependent epimerase/dehydratase family protein, putative, expressed K12448: UXE, UDP-arabinose 4-epimerase
13 Sobic.008G055600 OsFBX430 - F-box domain containing protein, expressed -
14 Sobic.001G072000 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
15 Sobic.001G279000 OsFBX382 - F-box domain containing protein, expressed -
16 Sobic.005G144000 glycosyltransferase, putative, expressed -
17 Sobic.002G381500 uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed K01087: trehalose 6-phosphate phosphatase
18 Sobic.003G244400 OsFBK1 - F-box domain and kelch repeat containing protein, expressed -
19 Sobic.006G204500 pectinacetylesterase domain containing protein, expressed -
20 Sobic.009G242200 CGMC_MAPKCMGC_2.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3


Gene co-expression network
sample Sobic004G007400 Sobic004G007400 Sobic005G050400 Sobic005G050400 Sobic004G007400--Sobic005G050400 Sobic001G112600 Sobic001G112600 Sobic004G007400--Sobic001G112600 Sobic009G087100 Sobic009G087100 Sobic004G007400--Sobic009G087100 Sobic008G156600 Sobic008G156600 Sobic004G007400--Sobic008G156600 Sobic002G176000 Sobic002G176000 Sobic004G007400--Sobic002G176000 Sobic003G441000 Sobic003G441000 Sobic004G007400--Sobic003G441000 Sobic004G358000 Sobic004G358000 Sobic004G007400--Sobic004G358000 Sobic004G046800 Sobic004G046800 Sobic004G007400--Sobic004G046800 Sobic002G364700 Sobic002G364700 Sobic004G007400--Sobic002G364700 Sobic005G050400--Sobic001G112600 Sobic001G072000 Sobic001G072000 Sobic005G050400--Sobic001G072000 Sobic005G050400--Sobic008G156600 Sobic009G242200 Sobic009G242200 Sobic005G050400--Sobic009G242200 Sobic002G170100 Sobic002G170100 Sobic005G050400--Sobic002G170100 Sobic005G050400--Sobic003G441000 Sobic005G050400--Sobic004G007400 Sobic005G144000 Sobic005G144000 Sobic005G050400--Sobic005G144000 Sobic009G163100 Sobic009G163100 Sobic005G050400--Sobic009G163100 Sobic001G112600--Sobic005G050400 Sobic001G112600--Sobic009G242200 Sobic001G112600--Sobic003G441000 Sobic001G112600--Sobic002G170100 Sobic001G414650 Sobic001G414650 Sobic001G112600--Sobic001G414650 Sobic003G244400 Sobic003G244400 Sobic001G112600--Sobic003G244400 Sobic008G055200 Sobic008G055200 Sobic001G112600--Sobic008G055200 Sobic001G112600--Sobic004G358000 Sobic001G112600--Sobic005G144000 Sobic008G055600 Sobic008G055600 Sobic009G087100--Sobic008G055600 Sobic009G087100--Sobic001G112600 Sobic009G087100--Sobic004G007400 Sobic001G279000 Sobic001G279000 Sobic009G087100--Sobic001G279000 Sobic005G136100 Sobic005G136100 Sobic009G087100--Sobic005G136100 Sobic009G087100--Sobic002G364700 Sobic009G087100--Sobic003G244400 Sobic001G194800 Sobic001G194800 Sobic009G087100--Sobic001G194800 Sobic007G074300 Sobic007G074300 Sobic009G087100--Sobic007G074300 Sobic008G156600--Sobic009G163100 Sobic008G156600--Sobic005G050400 Sobic008G156600--Sobic001G072000 Sobic008G156600--Sobic001G112600 Sobic005G020600 Sobic005G020600 Sobic008G156600--Sobic005G020600 Sobic008G171900 Sobic008G171900 Sobic008G156600--Sobic008G171900 Sobic004G241300 Sobic004G241300 Sobic008G156600--Sobic004G241300 Sobic008G156600--Sobic004G007400 Sobic001G322400 Sobic001G322400 Sobic008G156600--Sobic001G322400 Sobic006G170500 Sobic006G170500 Sobic002G176000--Sobic006G170500 Sobic006G224400 Sobic006G224400 Sobic002G176000--Sobic006G224400 Sobic007G081800 Sobic007G081800 Sobic002G176000--Sobic007G081800 Sobic004G046700 Sobic004G046700 Sobic002G176000--Sobic004G046700 Sobic010G123800 Sobic010G123800 Sobic002G176000--Sobic010G123800 Sobic005G058300 Sobic005G058300 Sobic002G176000--Sobic005G058300 Sobic009G182100 Sobic009G182100 Sobic002G176000--Sobic009G182100 Sobic007G110800 Sobic007G110800 Sobic002G176000--Sobic007G110800 Sobic006G017900 Sobic006G017900 Sobic002G176000--Sobic006G017900 Sobic003G441000--Sobic005G144000 Sobic003G441000--Sobic001G112600 Sobic003G441000--Sobic002G170100 Sobic003G441000--Sobic009G242200 Sobic003G441000--Sobic001G279000 Sobic003G441000--Sobic004G358000 Sobic003G290500 Sobic003G290500 Sobic003G441000--Sobic003G290500 Sobic003G441000--Sobic008G055200 Sobic005G170400 Sobic005G170400 Sobic003G441000--Sobic005G170400 Sobic004G358000--Sobic002G170100 Sobic007G091400 Sobic007G091400 Sobic004G358000--Sobic007G091400 Sobic001G103100 Sobic001G103100 Sobic004G358000--Sobic001G103100 Sobic004G358000--Sobic009G242200 Sobic004G358000--Sobic003G290500 Sobic003G218100 Sobic003G218100 Sobic004G358000--Sobic003G218100 Sobic003G304600 Sobic003G304600 Sobic004G358000--Sobic003G304600 Sobic002G380300 Sobic002G380300 Sobic004G358000--Sobic002G380300 Sobic008G176500 Sobic008G176500 Sobic004G358000--Sobic008G176500 Sobic004G046800--Sobic008G055200 Sobic004G046800--Sobic001G194800 Sobic001G106800 Sobic001G106800 Sobic004G046800--Sobic001G106800 Sobic002G192800 Sobic002G192800 Sobic004G046800--Sobic002G192800 Sobic008G120920 Sobic008G120920 Sobic004G046800--Sobic008G120920 Sobic008G029800 Sobic008G029800 Sobic004G046800--Sobic008G029800 Sobic010G124900 Sobic010G124900 Sobic004G046800--Sobic010G124900 Sobic001G117100 Sobic001G117100 Sobic004G046800--Sobic001G117100 Sobic008G030501 Sobic008G030501 Sobic004G046800--Sobic008G030501 Sobic006G204500 Sobic006G204500 Sobic002G364700--Sobic006G204500 Sobic005G176700 Sobic005G176700 Sobic002G364700--Sobic005G176700 Sobic001G370400 Sobic001G370400 Sobic002G364700--Sobic001G370400 Sobic006G115700 Sobic006G115700 Sobic002G364700--Sobic006G115700 Sobic008G020800 Sobic008G020800 Sobic002G364700--Sobic008G020800 Sobic002G307400 Sobic002G307400 Sobic002G364700--Sobic002G307400 Sobic004G100300 Sobic004G100300 Sobic002G364700--Sobic004G100300 Sobic003G070400 Sobic003G070400 Sobic002G364700--Sobic003G070400 Sobic006G070032 Sobic006G070032 Sobic002G364700--Sobic006G070032
Octagon: transcription factors


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