Gene annotation
Transcriptome id Sobic.004G107100.2,Sobic.004G107100.1
Synonym Sb04g008740, CID8
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
CID11, putative, expressed
UniProt A0A194YPZ9 , A0A194YNV4
Pfam PF07145 PF00076 PF07145 PF14259 PF00076
Panther DB PTHR24012
NCBI CDD KOG0131; Splicing factor 3b, subunit 4
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G53650 : CTC-interacting domain 8
RAP-DB (Rice) LOC_Os02g14760.2,LOC_Os02g14760.1 : CID11, putative, expressed
MaizeGDB (Corn) Zm00025a034475
Brachypodium KQJ94209
Barley HORVU7Hr1G080440.9 , HORVU7Hr1G080440.8 , HORVU7Hr1G080440.4 , HORVU7Hr1G080440.6 , HORVU7Hr1G080440.1 , HORVU7Hr1G080440.3
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G173300 - -
2 Sobic.004G113600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
3 Sobic.003G244400 OsFBK1 - F-box domain and kelch repeat containing protein, expressed -
4 Sobic.001G384200 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
5 Sobic.006G267100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.001G414650 - K08678: UXS1, UDP-glucuronate decarboxylase
7 Sobic.001G400000 NAD dependent epimerase/dehydratase family protein, putative, expressed K12448: UXE, UDP-arabinose 4-epimerase
8 Sobic.001G112600 Actin(PubMedID : 27325899)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@actin, putative, expressed K10355: actin, other eukaryote
9 Sobic.001G387300 exostosin family domain containing protein, expressed -
10 Sobic.001G370400 aberrant pollen transmission 1, putative, expressed -
11 Sobic.002G170100 NAD dependent epimerase/dehydratase family protein, putative, expressed K01784: galE, UDP-glucose 4-epimerase
12 Sobic.001G072000 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
13 Sobic.007G039200 MYB family transcription factor, putative, expressed -
14 Sobic.002G389600 transcription regulator, putative, expressed -
15 Sobic.002G176000 membrane protein, putative, expressed -
16 Sobic.007G070900 OsFBL43 - F-box domain and LRR containing protein, expressed -
17 Sobic.003G441000 rhoGAP domain containing protein, expressed -
18 Sobic.006G150300 expressed protein -
19 Sobic.004G328500 expressed protein -
20 Sobic.005G144000 glycosyltransferase, putative, expressed -


Gene co-expression network
sample Sobic004G107100 Sobic004G107100 Sobic010G173300 Sobic010G173300 Sobic004G107100--Sobic010G173300 Sobic004G113600 Sobic004G113600 Sobic004G107100--Sobic004G113600 Sobic003G244400 Sobic003G244400 Sobic004G107100--Sobic003G244400 Sobic001G384200 Sobic001G384200 Sobic004G107100--Sobic001G384200 Sobic006G267100 Sobic006G267100 Sobic004G107100--Sobic006G267100 Sobic001G414650 Sobic001G414650 Sobic004G107100--Sobic001G414650 Sobic001G400000 Sobic001G400000 Sobic004G107100--Sobic001G400000 Sobic001G112600 Sobic001G112600 Sobic004G107100--Sobic001G112600 Sobic001G387300 Sobic001G387300 Sobic004G107100--Sobic001G387300 Sobic010G173300--Sobic004G107100 Sobic006G150300 Sobic006G150300 Sobic010G173300--Sobic006G150300 Sobic010G173300--Sobic006G267100 Sobic010G173300--Sobic003G244400 Sobic007G039200 Sobic007G039200 Sobic010G173300--Sobic007G039200 Sobic009G202000 Sobic009G202000 Sobic010G173300--Sobic009G202000 Sobic010G173300--Sobic004G113600 Sobic004G180100 Sobic004G180100 Sobic010G173300--Sobic004G180100 Sobic002G170100 Sobic002G170100 Sobic010G173300--Sobic002G170100 Sobic004G113600--Sobic001G112600 Sobic004G113600--Sobic003G244400 Sobic004G358000 Sobic004G358000 Sobic004G113600--Sobic004G358000 Sobic009G242200 Sobic009G242200 Sobic004G113600--Sobic009G242200 Sobic004G113600--Sobic002G170100 Sobic005G050400 Sobic005G050400 Sobic004G113600--Sobic005G050400 Sobic004G113600--Sobic001G384200 Sobic004G113600--Sobic001G400000 Sobic005G054150 Sobic005G054150 Sobic004G113600--Sobic005G054150 Sobic001G370400 Sobic001G370400 Sobic003G244400--Sobic001G370400 Sobic001G103100 Sobic001G103100 Sobic003G244400--Sobic001G103100 Sobic008G055200 Sobic008G055200 Sobic003G244400--Sobic008G055200 Sobic001G432200 Sobic001G432200 Sobic003G244400--Sobic001G432200 Sobic006G204500 Sobic006G204500 Sobic003G244400--Sobic006G204500 Sobic001G340800 Sobic001G340800 Sobic003G244400--Sobic001G340800 Sobic002G364700 Sobic002G364700 Sobic003G244400--Sobic002G364700 Sobic007G091400 Sobic007G091400 Sobic003G244400--Sobic007G091400 Sobic010G003200 Sobic010G003200 Sobic003G244400--Sobic010G003200 Sobic003G024100 Sobic003G024100 Sobic001G384200--Sobic003G024100 Sobic001G384200--Sobic001G340800 Sobic008G166100 Sobic008G166100 Sobic001G384200--Sobic008G166100 Sobic009G178400 Sobic009G178400 Sobic001G384200--Sobic009G178400 Sobic001G384200--Sobic001G370400 Sobic001G384200--Sobic003G244400 Sobic001G384200--Sobic001G432200 Sobic003G175350 Sobic003G175350 Sobic001G384200--Sobic003G175350 Sobic001G384200--Sobic007G039200 Sobic008G071300 Sobic008G071300 Sobic006G267100--Sobic008G071300 Sobic006G267100--Sobic001G414650 Sobic002G340600 Sobic002G340600 Sobic006G267100--Sobic002G340600 Sobic003G114600 Sobic003G114600 Sobic006G267100--Sobic003G114600 Sobic002G283200 Sobic002G283200 Sobic006G267100--Sobic002G283200 Sobic006G105100 Sobic006G105100 Sobic006G267100--Sobic006G105100 Sobic004G042501 Sobic004G042501 Sobic006G267100--Sobic004G042501 Sobic002G380300 Sobic002G380300 Sobic006G267100--Sobic002G380300 Sobic003G290500 Sobic003G290500 Sobic006G267100--Sobic003G290500 Sobic001G357400 Sobic001G357400 Sobic001G414650--Sobic001G357400 Sobic002G404600 Sobic002G404600 Sobic001G414650--Sobic002G404600 Sobic001G414650--Sobic008G055200 Sobic002G381500 Sobic002G381500 Sobic001G414650--Sobic002G381500 Sobic007G070900 Sobic007G070900 Sobic001G414650--Sobic007G070900 Sobic001G414650--Sobic006G105100 Sobic004G054900 Sobic004G054900 Sobic001G414650--Sobic004G054900 Sobic009G110600 Sobic009G110600 Sobic001G414650--Sobic009G110600 Sobic001G337100 Sobic001G337100 Sobic001G414650--Sobic001G337100 Sobic001G400000--Sobic004G113600 Sobic001G400000--Sobic001G112600 Sobic001G400000--Sobic001G384200 Sobic001G400000--Sobic005G050400 Sobic001G400000--Sobic003G244400 Sobic006G265800 Sobic006G265800 Sobic001G400000--Sobic006G265800 Sobic004G007400 Sobic004G007400 Sobic001G400000--Sobic004G007400 Sobic008G055600 Sobic008G055600 Sobic001G400000--Sobic008G055600 Sobic008G156600 Sobic008G156600 Sobic001G400000--Sobic008G156600 Sobic001G112600--Sobic005G050400 Sobic001G112600--Sobic009G242200 Sobic003G441000 Sobic003G441000 Sobic001G112600--Sobic003G441000 Sobic001G112600--Sobic002G170100 Sobic001G112600--Sobic001G414650 Sobic001G112600--Sobic003G244400 Sobic001G112600--Sobic008G055200 Sobic001G112600--Sobic004G358000 Sobic005G144000 Sobic005G144000 Sobic001G112600--Sobic005G144000 Sobic001G387300--Sobic001G384200 Sobic001G387300--Sobic009G178400 Sobic001G387300--Sobic008G166100 Sobic001G322400 Sobic001G322400 Sobic001G387300--Sobic001G322400 Sobic001G387300--Sobic004G113600 Sobic001G387300--Sobic009G202000 Sobic001G387300--Sobic003G244400 Sobic001G072000 Sobic001G072000 Sobic001G387300--Sobic001G072000 Sobic001G387300--Sobic001G432200
Octagon: transcription factors


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