Gene annotation
Transcriptome id Sobic.002G420100.1
Synonym Sb02g043170, GAUT7, LGT7
Functional annotation glycosyl transferase, family 8, putative, expressed
UniProt C5X5N7
Pfam PF01501
Panther DB PTHR32116 PTHR32116:SF28
NCBI CDD -
KEGG Orthology K13648; alpha-1,4-galacturonosyltransferase
Gene Ontology GO:0016757; transferase activity, transferring glycosyl groups


Orthologs (automatic annotation)
TAIR AT2G38650 : galacturonosyltransferase 7
RAP-DB (Rice) LOC_Os07g48370.1 : glycosyl transferase, family 8, putative, expressed
MaizeGDB (Corn) Zm00025a055783 , Zm00025a002310 , Zm00025a015460 , Zm00025a022812 , Zm00025a049180 , Zm00025a052450
Brachypodium PNT74559 , KQK21856 , KQK14603 , KQK14604 , KQK14605
Barley HORVU4Hr1G051070.29 , HORVU4Hr1G051070.24 , HORVU4Hr1G051070.25 , HORVU4Hr1G051070.26 , HORVU4Hr1G051070.27 , HORVU4Hr1G051070.20 , HORVU4Hr1G051070.21 , HORVU4Hr1G051070.23 , HORVU4Hr1G051070.2 , HORVU4Hr1G051070.11 , HORVU4Hr1G051070.10 , HORVU4Hr1G051070.8 , HORVU4Hr1G051070.13 , HORVU4Hr1G051070.12 , HORVU4Hr1G051070.15 , HORVU4Hr1G051070.14 , HORVU4Hr1G051070.17 , HORVU4Hr1G051070.16 , HORVU4Hr1G051070.19 , HORVU0Hr1G002090.3 , HORVU0Hr1G002090.2 , HORVU0Hr1G002090.1 , HORVU4Hr1G051070.5 , HORVU4Hr1G051070.4 , HORVU4Hr1G051070.7 , HORVU4Hr1G051070.6 , HORVU4Hr1G051070.3 , HORVU4Hr1G051070.9
Wheat TraesCS2B02G120200 , TraesCS4B02G172800 , TraesCS4D02G174800 , TraesCS4A02G131800 , TraesCS2A02G103200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G253200 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
2 Sobic.010G182000 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6
3 Sobic.004G241300 kinesin motor domain containing protein, putative, expressed K10395: kinesin family member 4
4 Sobic.003G423700 endonuclease, putative, expressed K08991: crossover junction endonuclease MUS81
5 Sobic.008G156600 Leucine Rich Repeat family protein, expressed -
6 Sobic.003G293400 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
7 Sobic.001G131900 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
8 Sobic.001G400000 NAD dependent epimerase/dehydratase family protein, putative, expressed K12448: UXE, UDP-arabinose 4-epimerase
9 Sobic.008G104000 cyclin, putative, expressed K06627: cyclin-A
10 Sobic.008G171900 kinesin motor domain containing protein, putative, expressed K10406: kinesin family member C2/C3
11 Sobic.002G186200 ASC1, putative, expressed K04710: CERS1_2_3_4, ceramide synthetase
12 Sobic.005G138800 expressed protein -
13 Sobic.009G163100 kinesin motor domain containing protein, putative, expressed K10403: kinesin family member 22
14 Sobic.002G172401 - K07904: Ras-related protein Rab-11A
15 Sobic.004G261800 sugar-responsive gene(PubMedID : 25496467)@pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
16 Sobic.005G050400 syntaxin 6, putative, expressed -
17 Sobic.001G126800 WD domain, G-beta repeat domain containing protein, expressed K11790: DTL, CDT2, denticleless
18 Sobic.001G435700 HVA22, putative, expressed K17338: receptor expression-enhancing protein 1/2/3/4
19 Sobic.004G038400 fruit bromelain precursor, putative, expressed -
20 Sobic.009G042000 expressed protein -


Gene co-expression network
sample Sobic002G420100 Sobic002G420100 Sobic010G253200 Sobic010G253200 Sobic002G420100--Sobic010G253200 Sobic010G182000 Sobic010G182000 Sobic002G420100--Sobic010G182000 Sobic004G241300 Sobic004G241300 Sobic002G420100--Sobic004G241300 Sobic003G423700 Sobic003G423700 Sobic002G420100--Sobic003G423700 Sobic008G156600 Sobic008G156600 Sobic002G420100--Sobic008G156600 Sobic003G293400 Sobic003G293400 Sobic002G420100--Sobic003G293400 Sobic001G131900 Sobic001G131900 Sobic002G420100--Sobic001G131900 Sobic001G400000 Sobic001G400000 Sobic002G420100--Sobic001G400000 Sobic008G104000 Sobic008G104000 Sobic002G420100--Sobic008G104000 Sobic010G253200--Sobic002G420100 Sobic010G253200--Sobic004G241300 Sobic010G253200--Sobic003G423700 Sobic010G253200--Sobic008G104000 Sobic009G042000 Sobic009G042000 Sobic010G253200--Sobic009G042000 Sobic002G186200 Sobic002G186200 Sobic010G253200--Sobic002G186200 Sobic004G261800 Sobic004G261800 Sobic010G253200--Sobic004G261800 Sobic008G073500 Sobic008G073500 Sobic010G253200--Sobic008G073500 Sobic002G308000 Sobic002G308000 Sobic010G253200--Sobic002G308000 Sobic010G182000--Sobic002G420100 Sobic010G182000--Sobic003G423700 Sobic010G182000--Sobic008G156600 Sobic010G182000--Sobic008G104000 Sobic001G072000 Sobic001G072000 Sobic010G182000--Sobic001G072000 Sobic009G163100 Sobic009G163100 Sobic010G182000--Sobic009G163100 Sobic010G182000--Sobic001G400000 Sobic002G172401 Sobic002G172401 Sobic010G182000--Sobic002G172401 Sobic005G050400 Sobic005G050400 Sobic010G182000--Sobic005G050400 Sobic008G171900 Sobic008G171900 Sobic004G241300--Sobic008G171900 Sobic004G241300--Sobic008G156600 Sobic004G241300--Sobic009G163100 Sobic004G241300--Sobic003G423700 Sobic001G435700 Sobic001G435700 Sobic004G241300--Sobic001G435700 Sobic005G020600 Sobic005G020600 Sobic004G241300--Sobic005G020600 Sobic004G241300--Sobic002G420100 Sobic004G241300--Sobic010G253200 Sobic004G241300--Sobic002G172401 Sobic001G126800 Sobic001G126800 Sobic003G423700--Sobic001G126800 Sobic003G423700--Sobic004G241300 Sobic003G423700--Sobic008G104000 Sobic003G423700--Sobic008G156600 Sobic003G423700--Sobic002G420100 Sobic003G423700--Sobic009G163100 Sobic003G423700--Sobic010G182000 Sobic003G423700--Sobic008G171900 Sobic003G423700--Sobic010G253200 Sobic008G156600--Sobic009G163100 Sobic008G156600--Sobic005G050400 Sobic008G156600--Sobic001G072000 Sobic001G112600 Sobic001G112600 Sobic008G156600--Sobic001G112600 Sobic008G156600--Sobic005G020600 Sobic008G156600--Sobic008G171900 Sobic008G156600--Sobic004G241300 Sobic004G007400 Sobic004G007400 Sobic008G156600--Sobic004G007400 Sobic001G322400 Sobic001G322400 Sobic008G156600--Sobic001G322400 Sobic003G293400--Sobic001G131900 Sobic003G352900 Sobic003G352900 Sobic003G293400--Sobic003G352900 Sobic004G198300 Sobic004G198300 Sobic003G293400--Sobic004G198300 Sobic001G076600 Sobic001G076600 Sobic003G293400--Sobic001G076600 Sobic003G293400--Sobic002G420100 Sobic004G038400 Sobic004G038400 Sobic003G293400--Sobic004G038400 Sobic004G026600 Sobic004G026600 Sobic003G293400--Sobic004G026600 Sobic004G298600 Sobic004G298600 Sobic003G293400--Sobic004G298600 Sobic007G144100 Sobic007G144100 Sobic003G293400--Sobic007G144100 Sobic001G131900--Sobic003G293400 Sobic001G131900--Sobic003G352900 Sobic001G131900--Sobic004G038400 Sobic001G131900--Sobic001G076600 Sobic001G385300 Sobic001G385300 Sobic001G131900--Sobic001G385300 Sobic005G045800 Sobic005G045800 Sobic001G131900--Sobic005G045800 Sobic001G131900--Sobic004G298600 Sobic001G131900--Sobic002G420100 Sobic001G131900--Sobic007G144100 Sobic004G113600 Sobic004G113600 Sobic001G400000--Sobic004G113600 Sobic001G400000--Sobic001G112600 Sobic001G384200 Sobic001G384200 Sobic001G400000--Sobic001G384200 Sobic001G400000--Sobic005G050400 Sobic003G244400 Sobic003G244400 Sobic001G400000--Sobic003G244400 Sobic006G265800 Sobic006G265800 Sobic001G400000--Sobic006G265800 Sobic001G400000--Sobic004G007400 Sobic008G055600 Sobic008G055600 Sobic001G400000--Sobic008G055600 Sobic001G400000--Sobic008G156600 Sobic008G104000--Sobic003G423700 Sobic008G104000--Sobic004G241300 Sobic008G104000--Sobic010G253200 Sobic008G104000--Sobic010G182000 Sobic008G104000--Sobic002G420100 Sobic008G104000--Sobic001G126800 Sobic001G248400 Sobic001G248400 Sobic008G104000--Sobic001G248400 Sobic008G104000--Sobic008G156600 Sobic008G104000--Sobic008G171900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.