Gene annotation
Transcriptome id Sobic.004G038400.2,Sobic.004G038400.3,Sobic.004G038400.1
Synonym Sb04g003305, SAG12
Functional annotation fruit bromelain precursor, putative, expressed
UniProt A0A194YMM9 , C5XUK7 , A0A1Z5RKS9
Pfam PF08246
Panther DB PTHR12411
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008234; cysteine-type peptidase activity


Orthologs (automatic annotation)
TAIR AT5G45890 : senescence-associated gene 12
RAP-DB (Rice) LOC_Os01g22670.1 : fruit bromelain precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT69741
Barley -
Wheat TraesCS1B02G080100
Populus -


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cDNA sequences
Sobic.004G038400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G173700 - -
2 Sobic.009G048700 expressed protein -
3 Sobic.001G076600 hydrolase, acting on carbon-nitrogen, putative, expressed -
4 Sobic.004G168900 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
5 Sobic.003G005700 AGC_PVPK_like_kin82y.4 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
6 Sobic.007G144100 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
7 Sobic.002G243400 transporter, monovalent cation:proton antiporter-2 family, putative, expressed K14724: SLC9A8, solute carrier family 9 (sodium/hydrogen exchanger), member 8
8 Sobic.008G056600 OsFBX237 - F-box domain containing protein, expressed -
9 Sobic.009G002100 expressed protein -
10 Sobic.002G299500 expressed protein -
11 Sobic.009G242600 ATPCME, putative, expressed K15889: prenylcysteine alpha-carboxyl methylesterase
12 Sobic.004G045632 - -
13 Sobic.003G352900 OsFtsH3 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein
14 Sobic.002G097200 OsFBLD4 - F-box, LRR and FBD domain containing protein, expressed -
15 Sobic.008G155700 ankyrin repeat domain-containing protein 44, putative, expressed -
16 Sobic.001G384200 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
17 Sobic.008G166100 glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
18 Sobic.005G144500 glycosyltransferase, putative, expressed -
19 Sobic.001G034200 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
20 Sobic.001G131900 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase


Gene co-expression network
sample Sobic004G038400 Sobic004G038400 Sobic005G173700 Sobic005G173700 Sobic004G038400--Sobic005G173700 Sobic009G048700 Sobic009G048700 Sobic004G038400--Sobic009G048700 Sobic001G076600 Sobic001G076600 Sobic004G038400--Sobic001G076600 Sobic004G168900 Sobic004G168900 Sobic004G038400--Sobic004G168900 Sobic003G005700 Sobic003G005700 Sobic004G038400--Sobic003G005700 Sobic007G144100 Sobic007G144100 Sobic004G038400--Sobic007G144100 Sobic002G243400 Sobic002G243400 Sobic004G038400--Sobic002G243400 Sobic008G056600 Sobic008G056600 Sobic004G038400--Sobic008G056600 Sobic009G002100 Sobic009G002100 Sobic004G038400--Sobic009G002100 Sobic005G173700--Sobic004G038400 Sobic008G155700 Sobic008G155700 Sobic005G173700--Sobic008G155700 Sobic005G144500 Sobic005G144500 Sobic005G173700--Sobic005G144500 Sobic005G173700--Sobic009G002100 Sobic005G173700--Sobic009G048700 Sobic010G038000 Sobic010G038000 Sobic005G173700--Sobic010G038000 Sobic005G173700--Sobic001G076600 Sobic006G254400 Sobic006G254400 Sobic005G173700--Sobic006G254400 Sobic009G006700 Sobic009G006700 Sobic005G173700--Sobic009G006700 Sobic009G008000 Sobic009G008000 Sobic009G048700--Sobic009G008000 Sobic001G417700 Sobic001G417700 Sobic009G048700--Sobic001G417700 Sobic009G048700--Sobic008G155700 Sobic009G145000 Sobic009G145000 Sobic009G048700--Sobic009G145000 Sobic007G094700 Sobic007G094700 Sobic009G048700--Sobic007G094700 Sobic006G199500 Sobic006G199500 Sobic009G048700--Sobic006G199500 Sobic004G203150 Sobic004G203150 Sobic009G048700--Sobic004G203150 Sobic002G418300 Sobic002G418300 Sobic009G048700--Sobic002G418300 Sobic007G219601 Sobic007G219601 Sobic009G048700--Sobic007G219601 Sobic003G352900 Sobic003G352900 Sobic001G076600--Sobic003G352900 Sobic001G076600--Sobic007G144100 Sobic008G166100 Sobic008G166100 Sobic001G076600--Sobic008G166100 Sobic001G076600--Sobic004G038400 Sobic002G299500 Sobic002G299500 Sobic001G076600--Sobic002G299500 Sobic004G045632 Sobic004G045632 Sobic001G076600--Sobic004G045632 Sobic003G258100 Sobic003G258100 Sobic001G076600--Sobic003G258100 Sobic001G076600--Sobic005G173700 Sobic003G376900 Sobic003G376900 Sobic001G076600--Sobic003G376900 Sobic004G168900--Sobic009G048700 Sobic004G168900--Sobic008G056600 Sobic010G038300 Sobic010G038300 Sobic004G168900--Sobic010G038300 Sobic002G097200 Sobic002G097200 Sobic004G168900--Sobic002G097200 Sobic004G168900--Sobic001G417700 Sobic003G211800 Sobic003G211800 Sobic004G168900--Sobic003G211800 Sobic004G168900--Sobic009G145000 Sobic004G168900--Sobic002G243400 Sobic006G266400 Sobic006G266400 Sobic004G168900--Sobic006G266400 Sobic003G005700--Sobic009G145000 Sobic001G432200 Sobic001G432200 Sobic003G005700--Sobic001G432200 Sobic001G133400 Sobic001G133400 Sobic003G005700--Sobic001G133400 Sobic003G005700--Sobic002G097200 Sobic003G005700--Sobic009G048700 Sobic007G109301 Sobic007G109301 Sobic003G005700--Sobic007G109301 Sobic002G060101 Sobic002G060101 Sobic003G005700--Sobic002G060101 Sobic007G212500 Sobic007G212500 Sobic003G005700--Sobic007G212500 Sobic002G364700 Sobic002G364700 Sobic003G005700--Sobic002G364700 Sobic007G144100--Sobic003G258100 Sobic007G144100--Sobic003G352900 Sobic007G144100--Sobic001G076600 Sobic003G217800 Sobic003G217800 Sobic007G144100--Sobic003G217800 Sobic010G058300 Sobic010G058300 Sobic007G144100--Sobic010G058300 Sobic001G506400 Sobic001G506400 Sobic007G144100--Sobic001G506400 Sobic007G144100--Sobic002G299500 Sobic007G144100--Sobic004G045632 Sobic007G144100--Sobic004G038400 Sobic002G243400--Sobic009G145000 Sobic002G243400--Sobic001G417700 Sobic002G243400--Sobic009G048700 Sobic002G189500 Sobic002G189500 Sobic002G243400--Sobic002G189500 Sobic010G061600 Sobic010G061600 Sobic002G243400--Sobic010G061600 Sobic002G243400--Sobic009G008000 Sobic002G243400--Sobic009G002100 Sobic002G243400--Sobic002G418300 Sobic004G190400 Sobic004G190400 Sobic002G243400--Sobic004G190400 Sobic008G056600--Sobic002G418300 Sobic008G056600--Sobic001G417700 Sobic008G056600--Sobic007G094700 Sobic002G101600 Sobic002G101600 Sobic008G056600--Sobic002G101600 Sobic001G029300 Sobic001G029300 Sobic008G056600--Sobic001G029300 Sobic008G056600--Sobic009G048700 Sobic008G056600--Sobic006G266400 Sobic007G128000 Sobic007G128000 Sobic008G056600--Sobic007G128000 Sobic003G133600 Sobic003G133600 Sobic008G056600--Sobic003G133600 Sobic009G002100--Sobic009G145000 Sobic009G002100--Sobic002G243400 Sobic009G002100--Sobic001G417700 Sobic009G002100--Sobic002G418300 Sobic001G240600 Sobic001G240600 Sobic009G002100--Sobic001G240600 Sobic009G002100--Sobic008G155700 Sobic009G002100--Sobic002G189500 Sobic004G080800 Sobic004G080800 Sobic009G002100--Sobic004G080800 Sobic001G220500 Sobic001G220500 Sobic009G002100--Sobic001G220500
Octagon: transcription factors


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