Gene annotation
Transcriptome id Sobic.009G242600.4,Sobic.009G242600.2,Sobic.009G242600.3
Synonym ATPCME, PCME, Sb09g029420
Functional annotation ATPCME, putative, expressed
UniProt A0A1Z5R538 , A0A1Z5R414 , A0A1Z5R4Y2
Pfam PF07859
Panther DB PTHR23024 PTHR23024:SF221
NCBI CDD KOG1515; Arylacetamide deacetylase
KEGG Orthology K15889; prenylcysteine alpha-carboxyl methylesterase
Gene Ontology GO:0016787; hydrolase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT5G15860 : prenylcysteine methylesterase
RAP-DB (Rice) LOC_Os05g50170.2,LOC_Os05g50170.1 : ATPCME, putative, expressed
MaizeGDB (Corn) Zm00025a054602 , Zm00025a031720 , Zm00025a036684 , Zm00025a055434 , Zm00025a012140 , Zm00025a044680
Brachypodium PNT70670 , PNT70671 , PNT72475
Barley HORVU1Hr1G091110.8 , HORVU1Hr1G091110.3 , HORVU1Hr1G091110.2 , HORVU1Hr1G091110.1 , HORVU1Hr1G091110.7 , HORVU1Hr1G091110.6 , HORVU1Hr1G091110.5 , HORVU1Hr1G091110.4
Wheat TraesCS1B02G446100 , TraesCS1D02G423300 , TraesCS3B02G260300 , TraesCS3B02G260300 , TraesCS3D02G222200 , TraesCS3D02G222200 , TraesCS1A02G415900 , TraesCSU02G159800 , TraesCS3A02G231000 , TraesCS3A02G231000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G204500 pectinacetylesterase domain containing protein, expressed -
2 Sobic.010G003200 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
3 Sobic.002G364700 ZOS7-11 - C2H2 zinc finger protein, expressed -
4 Sobic.001G432200 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
5 Sobic.003G024100 MRH1, putative, expressed -
6 Sobic.004G273600 RNA recognition motif containing protein, putative, expressed -
7 Sobic.009G061500 - -
8 Sobic.001G240600 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
9 Sobic.001G142501 - -
10 Sobic.002G372000 - -
11 Sobic.009G061601 - -
12 Sobic.001G370400 aberrant pollen transmission 1, putative, expressed -
13 Sobic.001G402900 methyltransferase domain containing protein, expressed -
14 Sobic.006G115700 WRKY35, expressed K18835: WRKY transcription factor 2
15 Sobic.008G020800 GASR10 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
16 Sobic.003G297100 expressed protein -
17 Sobic.006G001100 ELMO/CED-12 family protein, putative, expressed -
18 Sobic.004G014200 serpin domain containing protein, putative, expressed K13963: serpin B
19 Sobic.008G136601 - -
20 Sobic.001G340800 exocyst complex component 6, putative, expressed -


Gene co-expression network
sample Sobic009G242600 Sobic009G242600 Sobic006G204500 Sobic006G204500 Sobic009G242600--Sobic006G204500 Sobic010G003200 Sobic010G003200 Sobic009G242600--Sobic010G003200 Sobic002G364700 Sobic002G364700 Sobic009G242600--Sobic002G364700 Sobic001G432200 Sobic001G432200 Sobic009G242600--Sobic001G432200 Sobic003G024100 Sobic003G024100 Sobic009G242600--Sobic003G024100 Sobic004G273600 Sobic004G273600 Sobic009G242600--Sobic004G273600 Sobic009G061500 Sobic009G061500 Sobic009G242600--Sobic009G061500 Sobic001G240600 Sobic001G240600 Sobic009G242600--Sobic001G240600 Sobic001G142501 Sobic001G142501 Sobic009G242600--Sobic001G142501 Sobic009G061601 Sobic009G061601 Sobic006G204500--Sobic009G061601 Sobic006G204500--Sobic004G273600 Sobic008G020800 Sobic008G020800 Sobic006G204500--Sobic008G020800 Sobic001G402900 Sobic001G402900 Sobic006G204500--Sobic001G402900 Sobic006G204500--Sobic010G003200 Sobic002G372000 Sobic002G372000 Sobic006G204500--Sobic002G372000 Sobic007G197000 Sobic007G197000 Sobic006G204500--Sobic007G197000 Sobic006G204500--Sobic002G364700 Sobic004G014200 Sobic004G014200 Sobic006G204500--Sobic004G014200 Sobic010G003200--Sobic004G273600 Sobic009G105100 Sobic009G105100 Sobic010G003200--Sobic009G105100 Sobic003G151400 Sobic003G151400 Sobic010G003200--Sobic003G151400 Sobic002G295800 Sobic002G295800 Sobic010G003200--Sobic002G295800 Sobic010G252600 Sobic010G252600 Sobic010G003200--Sobic010G252600 Sobic010G003200--Sobic002G372000 Sobic005G110160 Sobic005G110160 Sobic010G003200--Sobic005G110160 Sobic010G003200--Sobic001G142501 Sobic005G092100 Sobic005G092100 Sobic010G003200--Sobic005G092100 Sobic002G364700--Sobic006G204500 Sobic005G176700 Sobic005G176700 Sobic002G364700--Sobic005G176700 Sobic001G370400 Sobic001G370400 Sobic002G364700--Sobic001G370400 Sobic006G115700 Sobic006G115700 Sobic002G364700--Sobic006G115700 Sobic002G364700--Sobic008G020800 Sobic002G307400 Sobic002G307400 Sobic002G364700--Sobic002G307400 Sobic004G100300 Sobic004G100300 Sobic002G364700--Sobic004G100300 Sobic003G070400 Sobic003G070400 Sobic002G364700--Sobic003G070400 Sobic006G070032 Sobic006G070032 Sobic002G364700--Sobic006G070032 Sobic003G093100 Sobic003G093100 Sobic001G432200--Sobic003G093100 Sobic001G432200--Sobic001G370400 Sobic003G297100 Sobic003G297100 Sobic001G432200--Sobic003G297100 Sobic001G432200--Sobic009G061601 Sobic001G432200--Sobic003G151400 Sobic002G088600 Sobic002G088600 Sobic001G432200--Sobic002G088600 Sobic004G290600 Sobic004G290600 Sobic001G432200--Sobic004G290600 Sobic001G432200--Sobic006G204500 Sobic001G294500 Sobic001G294500 Sobic001G432200--Sobic001G294500 Sobic001G340800 Sobic001G340800 Sobic003G024100--Sobic001G340800 Sobic001G384200 Sobic001G384200 Sobic003G024100--Sobic001G384200 Sobic003G024100--Sobic001G370400 Sobic003G024100--Sobic009G061500 Sobic008G136601 Sobic008G136601 Sobic003G024100--Sobic008G136601 Sobic006G001100 Sobic006G001100 Sobic003G024100--Sobic006G001100 Sobic007G091400 Sobic007G091400 Sobic003G024100--Sobic007G091400 Sobic003G024100--Sobic010G003200 Sobic003G024100--Sobic009G061601 Sobic010G001200 Sobic010G001200 Sobic004G273600--Sobic010G001200 Sobic002G125100 Sobic002G125100 Sobic004G273600--Sobic002G125100 Sobic002G279900 Sobic002G279900 Sobic004G273600--Sobic002G279900 Sobic005G145400 Sobic005G145400 Sobic004G273600--Sobic005G145400 Sobic001G135950 Sobic001G135950 Sobic004G273600--Sobic001G135950 Sobic004G099200 Sobic004G099200 Sobic004G273600--Sobic004G099200 Sobic004G273600--Sobic009G105100 Sobic002G254700 Sobic002G254700 Sobic004G273600--Sobic002G254700 Sobic004G071900 Sobic004G071900 Sobic004G273600--Sobic004G071900 Sobic009G061500--Sobic009G061601 Sobic009G061500--Sobic008G136601 Sobic009G061500--Sobic003G297100 Sobic009G061500--Sobic001G340800 Sobic009G061500--Sobic008G020800 Sobic005G114201 Sobic005G114201 Sobic009G061500--Sobic005G114201 Sobic008G148600 Sobic008G148600 Sobic009G061500--Sobic008G148600 Sobic009G061500--Sobic001G370400 Sobic007G095333 Sobic007G095333 Sobic009G061500--Sobic007G095333 Sobic006G266400 Sobic006G266400 Sobic001G240600--Sobic006G266400 Sobic010G177200 Sobic010G177200 Sobic001G240600--Sobic010G177200 Sobic001G240600--Sobic003G070400 Sobic009G068400 Sobic009G068400 Sobic001G240600--Sobic009G068400 Sobic001G240600--Sobic007G197000 Sobic001G240600--Sobic004G273600 Sobic009G207700 Sobic009G207700 Sobic001G240600--Sobic009G207700 Sobic006G236400 Sobic006G236400 Sobic001G240600--Sobic006G236400 Sobic010G242600 Sobic010G242600 Sobic001G240600--Sobic010G242600 Sobic001G142501--Sobic009G105100 Sobic006G022700 Sobic006G022700 Sobic001G142501--Sobic006G022700 Sobic001G142501--Sobic002G125100 Sobic002G104801 Sobic002G104801 Sobic001G142501--Sobic002G104801 Sobic004G350400 Sobic004G350400 Sobic001G142501--Sobic004G350400 Sobic006G215500 Sobic006G215500 Sobic001G142501--Sobic006G215500 Sobic001G142501--Sobic005G110160 Sobic001G142501--Sobic004G071900 Sobic001G220800 Sobic001G220800 Sobic001G142501--Sobic001G220800
Octagon: transcription factors


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