Gene annotation
Transcriptome id Sobic.004G168900.2
Synonym Sb04g022030
Functional annotation elongation factor Tu family protein, putative, expressed
UniProt A0A194YQ78
Pfam PF03144 PF00679
Panther DB PTHR23115 PTHR23115:SF13
NCBI CDD -
KEGG Orthology K14536; ribosome assembly protein 1
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT3G22980 : Ribosomal protein S5/Elongation factor G/III/V family protein
RAP-DB (Rice) LOC_Os03g44780.1 : elongation factor Tu family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT73701
Barley HORVU5Hr1G092260.1 , HORVU5Hr1G092260.2 , HORVU5Hr1G092260.3 , HORVU5Hr1G092260.4
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G048700 expressed protein -
2 Sobic.008G056600 OsFBX237 - F-box domain containing protein, expressed -
3 Sobic.010G038300 OsFBDUF33 - F-box and DUF domain containing protein, expressed -
4 Sobic.002G097200 OsFBLD4 - F-box, LRR and FBD domain containing protein, expressed -
5 Sobic.001G417700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
6 Sobic.003G211800 expressed protein -
7 Sobic.009G145000 early-responsive to dehydration protein-related, putative, expressed -
8 Sobic.002G243400 transporter, monovalent cation:proton antiporter-2 family, putative, expressed K14724: SLC9A8, solute carrier family 9 (sodium/hydrogen exchanger), member 8
9 Sobic.006G266400 B3 DNA binding domain containing protein, expressed -
10 Sobic.002G060101 - -
11 Sobic.002G418300 vacuolar-sorting receptor precursor, putative, expressed -
12 Sobic.001G136000 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
13 Sobic.009G008000 transcription factor Dp, putative, expressed -
14 Sobic.007G128000 cytochrome P450, putative, expressed -
15 Sobic.005G037600 - -
16 Sobic.001G029300 anthranilate synthase component I-1, chloroplast precursor, putative, expressed K01657: anthranilate synthase component I
17 Sobic.010G129450 - -
18 Sobic.002G189500 expressed protein -
19 Sobic.002G101600 - -
20 Sobic.010G242600 OsFBDUF52 - F-box and DUF domain containing protein, expressed -


Gene co-expression network
sample Sobic004G168900 Sobic004G168900 Sobic009G048700 Sobic009G048700 Sobic004G168900--Sobic009G048700 Sobic008G056600 Sobic008G056600 Sobic004G168900--Sobic008G056600 Sobic010G038300 Sobic010G038300 Sobic004G168900--Sobic010G038300 Sobic002G097200 Sobic002G097200 Sobic004G168900--Sobic002G097200 Sobic001G417700 Sobic001G417700 Sobic004G168900--Sobic001G417700 Sobic003G211800 Sobic003G211800 Sobic004G168900--Sobic003G211800 Sobic009G145000 Sobic009G145000 Sobic004G168900--Sobic009G145000 Sobic002G243400 Sobic002G243400 Sobic004G168900--Sobic002G243400 Sobic006G266400 Sobic006G266400 Sobic004G168900--Sobic006G266400 Sobic009G008000 Sobic009G008000 Sobic009G048700--Sobic009G008000 Sobic009G048700--Sobic001G417700 Sobic008G155700 Sobic008G155700 Sobic009G048700--Sobic008G155700 Sobic009G048700--Sobic009G145000 Sobic007G094700 Sobic007G094700 Sobic009G048700--Sobic007G094700 Sobic006G199500 Sobic006G199500 Sobic009G048700--Sobic006G199500 Sobic004G203150 Sobic004G203150 Sobic009G048700--Sobic004G203150 Sobic002G418300 Sobic002G418300 Sobic009G048700--Sobic002G418300 Sobic007G219601 Sobic007G219601 Sobic009G048700--Sobic007G219601 Sobic008G056600--Sobic002G418300 Sobic008G056600--Sobic001G417700 Sobic008G056600--Sobic007G094700 Sobic002G101600 Sobic002G101600 Sobic008G056600--Sobic002G101600 Sobic001G029300 Sobic001G029300 Sobic008G056600--Sobic001G029300 Sobic008G056600--Sobic009G048700 Sobic008G056600--Sobic006G266400 Sobic007G128000 Sobic007G128000 Sobic008G056600--Sobic007G128000 Sobic003G133600 Sobic003G133600 Sobic008G056600--Sobic003G133600 Sobic007G063800 Sobic007G063800 Sobic010G038300--Sobic007G063800 Sobic005G202901 Sobic005G202901 Sobic010G038300--Sobic005G202901 Sobic004G014200 Sobic004G014200 Sobic010G038300--Sobic004G014200 Sobic002G060101 Sobic002G060101 Sobic010G038300--Sobic002G060101 Sobic006G070032 Sobic006G070032 Sobic010G038300--Sobic006G070032 Sobic008G029800 Sobic008G029800 Sobic010G038300--Sobic008G029800 Sobic010G266600 Sobic010G266600 Sobic010G038300--Sobic010G266600 Sobic006G204500 Sobic006G204500 Sobic010G038300--Sobic006G204500 Sobic008G020800 Sobic008G020800 Sobic010G038300--Sobic008G020800 Sobic002G097200--Sobic002G060101 Sobic005G037600 Sobic005G037600 Sobic002G097200--Sobic005G037600 Sobic002G097200--Sobic006G199500 Sobic002G097200--Sobic009G048700 Sobic001G504800 Sobic001G504800 Sobic002G097200--Sobic001G504800 Sobic002G097200--Sobic010G038300 Sobic002G097200--Sobic004G168900 Sobic002G097200--Sobic009G145000 Sobic003G005700 Sobic003G005700 Sobic002G097200--Sobic003G005700 Sobic001G417700--Sobic007G128000 Sobic001G417700--Sobic002G418300 Sobic001G417700--Sobic007G094700 Sobic001G417700--Sobic009G145000 Sobic001G417700--Sobic002G101600 Sobic001G417700--Sobic006G266400 Sobic001G136000 Sobic001G136000 Sobic001G417700--Sobic001G136000 Sobic002G189500 Sobic002G189500 Sobic001G417700--Sobic002G189500 Sobic001G240600 Sobic001G240600 Sobic001G417700--Sobic001G240600 Sobic003G211800--Sobic002G418300 Sobic003G211800--Sobic001G417700 Sobic003G211800--Sobic009G048700 Sobic003G211800--Sobic009G145000 Sobic003G211800--Sobic009G008000 Sobic003G211800--Sobic002G243400 Sobic003G211800--Sobic008G056600 Sobic003G211800--Sobic001G136000 Sobic002G099700 Sobic002G099700 Sobic003G211800--Sobic002G099700 Sobic009G145000--Sobic002G189500 Sobic009G145000--Sobic001G417700 Sobic004G328200 Sobic004G328200 Sobic009G145000--Sobic004G328200 Sobic009G145000--Sobic001G029300 Sobic009G145000--Sobic006G266400 Sobic004G190400 Sobic004G190400 Sobic009G145000--Sobic004G190400 Sobic009G145000--Sobic009G008000 Sobic009G145000--Sobic004G203150 Sobic009G145000--Sobic007G094700 Sobic002G243400--Sobic009G145000 Sobic002G243400--Sobic001G417700 Sobic002G243400--Sobic009G048700 Sobic002G243400--Sobic002G189500 Sobic010G061600 Sobic010G061600 Sobic002G243400--Sobic010G061600 Sobic002G243400--Sobic009G008000 Sobic009G002100 Sobic009G002100 Sobic002G243400--Sobic009G002100 Sobic002G243400--Sobic002G418300 Sobic002G243400--Sobic004G190400 Sobic006G266400--Sobic002G101600 Sobic006G266400--Sobic002G189500 Sobic010G242600 Sobic010G242600 Sobic006G266400--Sobic010G242600 Sobic010G177200 Sobic010G177200 Sobic006G266400--Sobic010G177200 Sobic006G266400--Sobic001G240600 Sobic006G266400--Sobic001G029300 Sobic009G250300 Sobic009G250300 Sobic006G266400--Sobic009G250300 Sobic002G015900 Sobic002G015900 Sobic006G266400--Sobic002G015900 Sobic003G070400 Sobic003G070400 Sobic006G266400--Sobic003G070400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.