Gene annotation
Transcriptome id Sobic.002G186200.2,Sobic.002G186200.1
Synonym Sb02g023420, LAG13
Functional annotation ASC1, putative, expressed
UniProt A0A1B6QC65
Pfam PF03798
Panther DB PTHR12560 PTHR12560:SF15
NCBI CDD KOG1607; Protein transporter of the TRAM (translocating chain-associating membrane) superfamily
KEGG Orthology K04710; CERS1_2_3_4, ceramide synthetase
Gene Ontology GO:0016021; integral component of membrane GO:0005783endoplasmic reticulum


Orthologs (automatic annotation)
TAIR AT1G13580 : LAG1 longevity assurance homolog 3
RAP-DB (Rice) LOC_Os02g37080.1 : ASC1, putative, expressed
MaizeGDB (Corn) Zm00025a046745 , Zm00025a013818
Brachypodium KQJ90054 , KQJ90055
Barley HORVU0Hr1G029180.4 , HORVU0Hr1G029180.2 , HORVU0Hr1G029180.3 , HORVU0Hr1G029180.1 , HORVU5Hr1G057320.7 , HORVU2Hr1G022290.4 , HORVU5Hr1G057320.4 , HORVU5Hr1G057320.5 , HORVU5Hr1G057320.2 , HORVU5Hr1G057320.3 , HORVU2Hr1G022290.3 , HORVU5Hr1G057320.1 , HORVU5Hr1G058850.5 , HORVU2Hr1G022290.1 , HORVU5Hr1G058850.7 , HORVU5Hr1G058850.6 , HORVU5Hr1G058850.1 , HORVU5Hr1G057320.8 , HORVU5Hr1G057320.9 , HORVU2Hr1G022290.2 , HORVU5Hr1G058850.4 , HORVU5Hr1G058850.3 , HORVU5Hr1G058850.2
Wheat TraesCS5A02G205900 , TraesCS5A02G193100 , TraesCS5D02G202300 , TraesCS5B02G195000 , TraesCS5A02G194400 , TraesCS5B02G188100 , TraesCS5B02G188300 , TraesCS5A02G188700 , TraesCS5B02G189800 , TraesCS5D02G197000 , TraesCS5D02G197000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G261800 sugar-responsive gene(PubMedID : 25496467)@pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
2 Sobic.003G423700 endonuclease, putative, expressed K08991: crossover junction endonuclease MUS81
3 Sobic.010G253200 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
4 Sobic.002G420100 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
5 Sobic.004G241300 kinesin motor domain containing protein, putative, expressed K10395: kinesin family member 4
6 Sobic.001G126800 WD domain, G-beta repeat domain containing protein, expressed K11790: DTL, CDT2, denticleless
7 Sobic.008G156600 Leucine Rich Repeat family protein, expressed -
8 Sobic.003G013700 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
9 Sobic.001G400000 NAD dependent epimerase/dehydratase family protein, putative, expressed K12448: UXE, UDP-arabinose 4-epimerase
10 Sobic.005G050400 syntaxin 6, putative, expressed -
11 Sobic.010G189432 - -
12 Sobic.001G529200 no apical meristem protein, putative, expressed -
13 Sobic.007G014700 Fructokinase-2 (Zm)(PubMedID : 27208977)@kinase, pfkB family, putative, expressed K00847: E2.7.1.4, fructokinase
14 Sobic.008G104000 cyclin, putative, expressed K06627: cyclin-A
15 Sobic.008G010600 plant viral response family protein, putative, expressed -
16 Sobic.010G182000 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6
17 Sobic.009G163100 kinesin motor domain containing protein, putative, expressed K10403: kinesin family member 22
18 Sobic.004G035400 PFT1, putative, expressed K04733: interleukin-1 receptor-associated kinase 4
19 Sobic.004G007400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
20 Sobic.001G435700 HVA22, putative, expressed K17338: receptor expression-enhancing protein 1/2/3/4


Gene co-expression network
sample Sobic002G186200 Sobic002G186200 Sobic004G261800 Sobic004G261800 Sobic002G186200--Sobic004G261800 Sobic003G423700 Sobic003G423700 Sobic002G186200--Sobic003G423700 Sobic010G253200 Sobic010G253200 Sobic002G186200--Sobic010G253200 Sobic002G420100 Sobic002G420100 Sobic002G186200--Sobic002G420100 Sobic004G241300 Sobic004G241300 Sobic002G186200--Sobic004G241300 Sobic001G126800 Sobic001G126800 Sobic002G186200--Sobic001G126800 Sobic008G156600 Sobic008G156600 Sobic002G186200--Sobic008G156600 Sobic003G013700 Sobic003G013700 Sobic002G186200--Sobic003G013700 Sobic001G400000 Sobic001G400000 Sobic002G186200--Sobic001G400000 Sobic004G261800--Sobic003G013700 Sobic004G261800--Sobic002G186200 Sobic007G014700 Sobic007G014700 Sobic004G261800--Sobic007G014700 Sobic004G261800--Sobic010G253200 Sobic004G261800--Sobic002G420100 Sobic002G201700 Sobic002G201700 Sobic004G261800--Sobic002G201700 Sobic001G303900 Sobic001G303900 Sobic004G261800--Sobic001G303900 Sobic004G261800--Sobic003G423700 Sobic004G261800--Sobic008G156600 Sobic003G423700--Sobic001G126800 Sobic003G423700--Sobic004G241300 Sobic008G104000 Sobic008G104000 Sobic003G423700--Sobic008G104000 Sobic003G423700--Sobic008G156600 Sobic003G423700--Sobic002G420100 Sobic009G163100 Sobic009G163100 Sobic003G423700--Sobic009G163100 Sobic010G182000 Sobic010G182000 Sobic003G423700--Sobic010G182000 Sobic008G171900 Sobic008G171900 Sobic003G423700--Sobic008G171900 Sobic003G423700--Sobic010G253200 Sobic010G253200--Sobic002G420100 Sobic010G253200--Sobic004G241300 Sobic010G253200--Sobic003G423700 Sobic010G253200--Sobic008G104000 Sobic009G042000 Sobic009G042000 Sobic010G253200--Sobic009G042000 Sobic010G253200--Sobic002G186200 Sobic010G253200--Sobic004G261800 Sobic008G073500 Sobic008G073500 Sobic010G253200--Sobic008G073500 Sobic002G308000 Sobic002G308000 Sobic010G253200--Sobic002G308000 Sobic002G420100--Sobic010G253200 Sobic002G420100--Sobic010G182000 Sobic002G420100--Sobic004G241300 Sobic002G420100--Sobic003G423700 Sobic002G420100--Sobic008G156600 Sobic003G293400 Sobic003G293400 Sobic002G420100--Sobic003G293400 Sobic001G131900 Sobic001G131900 Sobic002G420100--Sobic001G131900 Sobic002G420100--Sobic001G400000 Sobic002G420100--Sobic008G104000 Sobic004G241300--Sobic008G171900 Sobic004G241300--Sobic008G156600 Sobic004G241300--Sobic009G163100 Sobic004G241300--Sobic003G423700 Sobic001G435700 Sobic001G435700 Sobic004G241300--Sobic001G435700 Sobic005G020600 Sobic005G020600 Sobic004G241300--Sobic005G020600 Sobic004G241300--Sobic002G420100 Sobic004G241300--Sobic010G253200 Sobic002G172401 Sobic002G172401 Sobic004G241300--Sobic002G172401 Sobic001G126800--Sobic003G423700 Sobic001G126800--Sobic004G241300 Sobic001G126800--Sobic008G104000 Sobic001G126800--Sobic002G420100 Sobic001G248400 Sobic001G248400 Sobic001G126800--Sobic001G248400 Sobic001G126800--Sobic010G182000 Sobic001G126800--Sobic002G186200 Sobic009G214500 Sobic009G214500 Sobic001G126800--Sobic009G214500 Sobic001G126800--Sobic010G253200 Sobic008G156600--Sobic009G163100 Sobic005G050400 Sobic005G050400 Sobic008G156600--Sobic005G050400 Sobic001G072000 Sobic001G072000 Sobic008G156600--Sobic001G072000 Sobic001G112600 Sobic001G112600 Sobic008G156600--Sobic001G112600 Sobic008G156600--Sobic005G020600 Sobic008G156600--Sobic008G171900 Sobic008G156600--Sobic004G241300 Sobic004G007400 Sobic004G007400 Sobic008G156600--Sobic004G007400 Sobic001G322400 Sobic001G322400 Sobic008G156600--Sobic001G322400 Sobic003G013700--Sobic004G261800 Sobic003G013700--Sobic005G050400 Sobic003G013700--Sobic001G072000 Sobic003G013700--Sobic008G156600 Sobic003G089100 Sobic003G089100 Sobic003G013700--Sobic003G089100 Sobic003G013700--Sobic009G163100 Sobic003G013700--Sobic001G322400 Sobic003G013700--Sobic002G172401 Sobic003G013700--Sobic001G112600 Sobic004G113600 Sobic004G113600 Sobic001G400000--Sobic004G113600 Sobic001G400000--Sobic001G112600 Sobic001G384200 Sobic001G384200 Sobic001G400000--Sobic001G384200 Sobic001G400000--Sobic005G050400 Sobic003G244400 Sobic003G244400 Sobic001G400000--Sobic003G244400 Sobic006G265800 Sobic006G265800 Sobic001G400000--Sobic006G265800 Sobic001G400000--Sobic004G007400 Sobic008G055600 Sobic008G055600 Sobic001G400000--Sobic008G055600 Sobic001G400000--Sobic008G156600
Octagon: transcription factors


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