Gene annotation
Transcriptome id Sobic.004G035400.4,Sobic.004G035400.5,Sobic.004G035400.6
Synonym CRK7
Functional annotation PFT1, putative, expressed
UniProt A0A194YML8
Pfam PF00069
Panther DB PTHR27002 PTHR27002:SF111
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology K04733; interleukin-1 receptor-associated kinase 4
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT4G23150 : cysteine-rich RLK (RECEPTOR-like protein kinase) 7
RAP-DB (Rice) LOC_Os09g13610.1 : PFT1, putative, expressed
MaizeGDB (Corn) Zm00025a013708 , Zm00025a015947
Brachypodium -
Barley -
Wheat TraesCS2A02G558500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G089600 Up-regulation in phyB-1 mutant(PubMedID : 26893475)@trehalose phosphatase, putative, expressed K01087: trehalose 6-phosphate phosphatase
2 Sobic.002G381400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed K01087: trehalose 6-phosphate phosphatase
3 Sobic.004G241300 kinesin motor domain containing protein, putative, expressed K10395: kinesin family member 4
4 Sobic.008G023300 stripe rust resistance protein Yr10, putative, expressed -
5 Sobic.002G201700 phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
6 Sobic.010G253200 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
7 Sobic.004G261800 sugar-responsive gene(PubMedID : 25496467)@pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
8 Sobic.002G186200 ASC1, putative, expressed K04710: CERS1_2_3_4, ceramide synthetase
9 Sobic.001G213666 - -
10 Sobic.007G127500 - -
11 Sobic.002G420100 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
12 Sobic.010G189432 - -
13 Sobic.008G104000 cyclin, putative, expressed K06627: cyclin-A
14 Sobic.006G256000 - -
15 Sobic.007G127550 - -
16 Sobic.009G042000 expressed protein -
17 Sobic.001G342101 - -
18 Sobic.003G187700 polygalacturonase, putative, expressed -
19 Sobic.001G400000 NAD dependent epimerase/dehydratase family protein, putative, expressed K12448: UXE, UDP-arabinose 4-epimerase
20 Sobic.004G253200 amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2


Gene co-expression network
sample Sobic004G035400 Sobic004G035400 Sobic010G089600 Sobic010G089600 Sobic004G035400--Sobic010G089600 Sobic002G381400 Sobic002G381400 Sobic004G035400--Sobic002G381400 Sobic004G241300 Sobic004G241300 Sobic004G035400--Sobic004G241300 Sobic008G023300 Sobic008G023300 Sobic004G035400--Sobic008G023300 Sobic002G201700 Sobic002G201700 Sobic004G035400--Sobic002G201700 Sobic010G253200 Sobic010G253200 Sobic004G035400--Sobic010G253200 Sobic004G261800 Sobic004G261800 Sobic004G035400--Sobic004G261800 Sobic002G186200 Sobic002G186200 Sobic004G035400--Sobic002G186200 Sobic001G213666 Sobic001G213666 Sobic004G035400--Sobic001G213666 Sobic010G089600--Sobic008G023300 Sobic010G089600--Sobic004G035400 Sobic007G127500 Sobic007G127500 Sobic010G089600--Sobic007G127500 Sobic003G187700 Sobic003G187700 Sobic010G089600--Sobic003G187700 Sobic010G189432 Sobic010G189432 Sobic010G089600--Sobic010G189432 Sobic010G089600--Sobic001G213666 Sobic004G253200 Sobic004G253200 Sobic010G089600--Sobic004G253200 Sobic007G127550 Sobic007G127550 Sobic010G089600--Sobic007G127550 Sobic004G184101 Sobic004G184101 Sobic010G089600--Sobic004G184101 Sobic002G381400--Sobic008G023300 Sobic002G381400--Sobic004G035400 Sobic002G381400--Sobic010G089600 Sobic002G381400--Sobic004G184101 Sobic002G381400--Sobic007G127550 Sobic001G140000 Sobic001G140000 Sobic002G381400--Sobic001G140000 Sobic002G381400--Sobic010G189432 Sobic002G381400--Sobic001G213666 Sobic002G381400--Sobic004G261800 Sobic008G171900 Sobic008G171900 Sobic004G241300--Sobic008G171900 Sobic008G156600 Sobic008G156600 Sobic004G241300--Sobic008G156600 Sobic009G163100 Sobic009G163100 Sobic004G241300--Sobic009G163100 Sobic003G423700 Sobic003G423700 Sobic004G241300--Sobic003G423700 Sobic001G435700 Sobic001G435700 Sobic004G241300--Sobic001G435700 Sobic005G020600 Sobic005G020600 Sobic004G241300--Sobic005G020600 Sobic002G420100 Sobic002G420100 Sobic004G241300--Sobic002G420100 Sobic004G241300--Sobic010G253200 Sobic002G172401 Sobic002G172401 Sobic004G241300--Sobic002G172401 Sobic008G023300--Sobic007G127500 Sobic008G023300--Sobic007G127550 Sobic008G023300--Sobic010G089600 Sobic008G023300--Sobic004G184101 Sobic008G023300--Sobic002G381400 Sobic008G023300--Sobic001G213666 Sobic008G023300--Sobic004G035400 Sobic010G250300 Sobic010G250300 Sobic008G023300--Sobic010G250300 Sobic008G023300--Sobic003G187700 Sobic002G167100 Sobic002G167100 Sobic002G201700--Sobic002G167100 Sobic009G025700 Sobic009G025700 Sobic002G201700--Sobic009G025700 Sobic007G192500 Sobic007G192500 Sobic002G201700--Sobic007G192500 Sobic003G013700 Sobic003G013700 Sobic002G201700--Sobic003G013700 Sobic002G201700--Sobic004G261800 Sobic009G042000 Sobic009G042000 Sobic002G201700--Sobic009G042000 Sobic003G022000 Sobic003G022000 Sobic002G201700--Sobic003G022000 Sobic002G201700--Sobic010G253200 Sobic004G284800 Sobic004G284800 Sobic002G201700--Sobic004G284800 Sobic010G253200--Sobic002G420100 Sobic010G253200--Sobic004G241300 Sobic010G253200--Sobic003G423700 Sobic008G104000 Sobic008G104000 Sobic010G253200--Sobic008G104000 Sobic010G253200--Sobic009G042000 Sobic010G253200--Sobic002G186200 Sobic010G253200--Sobic004G261800 Sobic008G073500 Sobic008G073500 Sobic010G253200--Sobic008G073500 Sobic002G308000 Sobic002G308000 Sobic010G253200--Sobic002G308000 Sobic004G261800--Sobic003G013700 Sobic004G261800--Sobic002G186200 Sobic007G014700 Sobic007G014700 Sobic004G261800--Sobic007G014700 Sobic004G261800--Sobic010G253200 Sobic004G261800--Sobic002G420100 Sobic004G261800--Sobic002G201700 Sobic001G303900 Sobic001G303900 Sobic004G261800--Sobic001G303900 Sobic004G261800--Sobic003G423700 Sobic004G261800--Sobic008G156600 Sobic002G186200--Sobic004G261800 Sobic002G186200--Sobic003G423700 Sobic002G186200--Sobic010G253200 Sobic002G186200--Sobic002G420100 Sobic002G186200--Sobic004G241300 Sobic001G126800 Sobic001G126800 Sobic002G186200--Sobic001G126800 Sobic002G186200--Sobic008G156600 Sobic002G186200--Sobic003G013700 Sobic001G400000 Sobic001G400000 Sobic002G186200--Sobic001G400000 Sobic001G213666--Sobic003G187700 Sobic001G213666--Sobic004G253200 Sobic001G213666--Sobic010G189432 Sobic008G055600 Sobic008G055600 Sobic001G213666--Sobic008G055600 Sobic001G342101 Sobic001G342101 Sobic001G213666--Sobic001G342101 Sobic006G256000 Sobic006G256000 Sobic001G213666--Sobic006G256000 Sobic004G120500 Sobic004G120500 Sobic001G213666--Sobic004G120500 Sobic009G119600 Sobic009G119600 Sobic001G213666--Sobic009G119600 Sobic001G213666--Sobic001G400000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.