Gene annotation
Transcriptome id Sobic.003G187700.1
Synonym Sb03g025260
Functional annotation polygalacturonase, putative, expressed
UniProt A0A1B6Q458
Pfam PF13229
Panther DB PTHR31375:SF12 PTHR31375
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G26610 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os01g36830.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) Zm00025a038336
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G253200 amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2
2 Sobic.008G055600 OsFBX430 - F-box domain containing protein, expressed -
3 Sobic.010G189432 - -
4 Sobic.001G342101 - -
5 Sobic.009G119600 powdery mildew resistant protein 5, putative, expressed -
6 Sobic.001G213666 - -
7 Sobic.005G144000 glycosyltransferase, putative, expressed -
8 Sobic.004G120500 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
9 Sobic.001G279000 OsFBX382 - F-box domain containing protein, expressed -
10 Sobic.003G441000 rhoGAP domain containing protein, expressed -
11 Sobic.001G350100 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@RING-H2 finger protein ATL5H precursor, putative, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
12 Sobic.009G189700 - -
13 Sobic.008G122800 Recombinant SbCYP728B35 catalyzed the conversion of 5DS (5-deoxystrigol) to sorgomol in vitro.(PubMedID : 34970291)@cytochrome P450, putative, expressed -
14 Sobic.005G049200 exo70 exocyst complex subunit, putative, expressed -
15 Sobic.002G170100 NAD dependent epimerase/dehydratase family protein, putative, expressed K01784: galE, UDP-glucose 4-epimerase
16 Sobic.003G013900 - -
17 Sobic.001G112600 Actin(PubMedID : 27325899)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@actin, putative, expressed K10355: actin, other eukaryote
18 Sobic.009G242200 CGMC_MAPKCMGC_2.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
19 Sobic.004G358000 CAMK_CAMK_like.16 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
20 Sobic.003G065100 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR1 - Auxin-responsive SAUR gene family member, expressed -


Gene co-expression network
sample Sobic003G187700 Sobic003G187700 Sobic004G253200 Sobic004G253200 Sobic003G187700--Sobic004G253200 Sobic008G055600 Sobic008G055600 Sobic003G187700--Sobic008G055600 Sobic010G189432 Sobic010G189432 Sobic003G187700--Sobic010G189432 Sobic001G342101 Sobic001G342101 Sobic003G187700--Sobic001G342101 Sobic009G119600 Sobic009G119600 Sobic003G187700--Sobic009G119600 Sobic001G213666 Sobic001G213666 Sobic003G187700--Sobic001G213666 Sobic005G144000 Sobic005G144000 Sobic003G187700--Sobic005G144000 Sobic004G120500 Sobic004G120500 Sobic003G187700--Sobic004G120500 Sobic001G279000 Sobic001G279000 Sobic003G187700--Sobic001G279000 Sobic004G253200--Sobic008G055600 Sobic004G253200--Sobic003G187700 Sobic004G253200--Sobic009G119600 Sobic004G253200--Sobic010G189432 Sobic004G253200--Sobic004G120500 Sobic004G253200--Sobic001G342101 Sobic004G253200--Sobic005G144000 Sobic004G253200--Sobic001G213666 Sobic004G253200--Sobic001G279000 Sobic008G055600--Sobic004G253200 Sobic008G055600--Sobic001G279000 Sobic008G055600--Sobic005G144000 Sobic008G055600--Sobic009G119600 Sobic008G055600--Sobic001G342101 Sobic008G055600--Sobic003G187700 Sobic003G244400 Sobic003G244400 Sobic008G055600--Sobic003G244400 Sobic004G358000 Sobic004G358000 Sobic008G055600--Sobic004G358000 Sobic003G441000 Sobic003G441000 Sobic008G055600--Sobic003G441000 Sobic010G189432--Sobic004G253200 Sobic010G189432--Sobic008G055600 Sobic010G189432--Sobic003G187700 Sobic010G189432--Sobic009G119600 Sobic010G189432--Sobic001G213666 Sobic010G189432--Sobic001G342101 Sobic010G189432--Sobic004G120500 Sobic001G400000 Sobic001G400000 Sobic010G189432--Sobic001G400000 Sobic009G087100 Sobic009G087100 Sobic010G189432--Sobic009G087100 Sobic001G342101--Sobic008G055600 Sobic001G342101--Sobic005G144000 Sobic001G342101--Sobic003G187700 Sobic001G342101--Sobic004G253200 Sobic001G342101--Sobic003G441000 Sobic001G342101--Sobic001G279000 Sobic001G342101--Sobic010G189432 Sobic005G050400 Sobic005G050400 Sobic001G342101--Sobic005G050400 Sobic001G342101--Sobic001G400000 Sobic009G119600--Sobic004G253200 Sobic009G119600--Sobic008G055600 Sobic009G119600--Sobic010G189432 Sobic009G119600--Sobic003G187700 Sobic003G013900 Sobic003G013900 Sobic009G119600--Sobic003G013900 Sobic009G119600--Sobic001G279000 Sobic009G119600--Sobic005G144000 Sobic002G170100 Sobic002G170100 Sobic009G119600--Sobic002G170100 Sobic009G119600--Sobic003G244400 Sobic001G213666--Sobic003G187700 Sobic001G213666--Sobic004G253200 Sobic001G213666--Sobic010G189432 Sobic001G213666--Sobic008G055600 Sobic001G213666--Sobic001G342101 Sobic006G256000 Sobic006G256000 Sobic001G213666--Sobic006G256000 Sobic001G213666--Sobic004G120500 Sobic001G213666--Sobic009G119600 Sobic001G213666--Sobic001G400000 Sobic005G144000--Sobic003G441000 Sobic005G144000--Sobic002G170100 Sobic008G122800 Sobic008G122800 Sobic005G144000--Sobic008G122800 Sobic005G144000--Sobic001G279000 Sobic009G242200 Sobic009G242200 Sobic005G144000--Sobic009G242200 Sobic001G503600 Sobic001G503600 Sobic005G144000--Sobic001G503600 Sobic004G180100 Sobic004G180100 Sobic005G144000--Sobic004G180100 Sobic008G071300 Sobic008G071300 Sobic005G144000--Sobic008G071300 Sobic002G404600 Sobic002G404600 Sobic005G144000--Sobic002G404600 Sobic004G120500--Sobic004G253200 Sobic009G189700 Sobic009G189700 Sobic004G120500--Sobic009G189700 Sobic004G120500--Sobic008G055600 Sobic004G120500--Sobic005G144000 Sobic001G350100 Sobic001G350100 Sobic004G120500--Sobic001G350100 Sobic004G120500--Sobic003G187700 Sobic004G120500--Sobic002G170100 Sobic004G120500--Sobic001G503600 Sobic004G120500--Sobic009G119600 Sobic001G279000--Sobic003G013900 Sobic002G380300 Sobic002G380300 Sobic001G279000--Sobic002G380300 Sobic008G176500 Sobic008G176500 Sobic001G279000--Sobic008G176500 Sobic003G019450 Sobic003G019450 Sobic001G279000--Sobic003G019450 Sobic007G091400 Sobic007G091400 Sobic001G279000--Sobic007G091400 Sobic006G236400 Sobic006G236400 Sobic001G279000--Sobic006G236400 Sobic001G370400 Sobic001G370400 Sobic001G279000--Sobic001G370400 Sobic010G016200 Sobic010G016200 Sobic001G279000--Sobic010G016200 Sobic003G304600 Sobic003G304600 Sobic001G279000--Sobic003G304600
Octagon: transcription factors


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