Gene annotation
Transcriptome id Sobic.001G350100.1
Synonym ATL6, Sb01g033510
Functional annotation expressed high in San Chi San (an efficient nitrogen user) (PubMedID : 28697783)
RING-H2 finger protein ATL5H precursor, putative, expressed
UniProt A0A1B6QMT4
Pfam PF13639
Panther DB PTHR14155
NCBI CDD -
KEGG Orthology K10664; E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G72200 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os03g27360.1 : RING-H2 finger protein ATL5H precursor, putative, expressed
MaizeGDB (Corn) Zm00025a002731 , Zm00025a004942
Brachypodium PNT64755
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G120500 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
2 Sobic.005G144000 glycosyltransferase, putative, expressed -
3 Sobic.004G253200 amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2
4 Sobic.003G187700 polygalacturonase, putative, expressed -
5 Sobic.008G055600 OsFBX430 - F-box domain containing protein, expressed -
6 Sobic.003G234500 CA(PubMedID : 19549309)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
7 Sobic.002G170100 NAD dependent epimerase/dehydratase family protein, putative, expressed K01784: galE, UDP-glucose 4-epimerase
8 Sobic.009G189700 - -
9 Sobic.008G122800 Recombinant SbCYP728B35 catalyzed the conversion of 5DS (5-deoxystrigol) to sorgomol in vitro.(PubMedID : 34970291)@cytochrome P450, putative, expressed -
10 Sobic.001G342101 - -
11 Sobic.009G119600 powdery mildew resistant protein 5, putative, expressed -
12 Sobic.003G110932 - -
13 Sobic.008G071300 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
14 Sobic.001G112600 Actin(PubMedID : 27325899)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@actin, putative, expressed K10355: actin, other eukaryote
15 Sobic.001G279000 OsFBX382 - F-box domain containing protein, expressed -
16 Sobic.001G503600 expressed protein -
17 Sobic.004G180100 - -
18 Sobic.004G154100 OsFBX346 - F-box domain containing protein, expressed -
19 Sobic.006G267100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.009G242200 CGMC_MAPKCMGC_2.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3


Gene co-expression network
sample Sobic001G350100 Sobic001G350100 Sobic004G120500 Sobic004G120500 Sobic001G350100--Sobic004G120500 Sobic005G144000 Sobic005G144000 Sobic001G350100--Sobic005G144000 Sobic004G253200 Sobic004G253200 Sobic001G350100--Sobic004G253200 Sobic003G187700 Sobic003G187700 Sobic001G350100--Sobic003G187700 Sobic008G055600 Sobic008G055600 Sobic001G350100--Sobic008G055600 Sobic003G234500 Sobic003G234500 Sobic001G350100--Sobic003G234500 Sobic002G170100 Sobic002G170100 Sobic001G350100--Sobic002G170100 Sobic009G189700 Sobic009G189700 Sobic001G350100--Sobic009G189700 Sobic008G122800 Sobic008G122800 Sobic001G350100--Sobic008G122800 Sobic004G120500--Sobic004G253200 Sobic004G120500--Sobic009G189700 Sobic004G120500--Sobic008G055600 Sobic004G120500--Sobic005G144000 Sobic004G120500--Sobic001G350100 Sobic004G120500--Sobic003G187700 Sobic004G120500--Sobic002G170100 Sobic001G503600 Sobic001G503600 Sobic004G120500--Sobic001G503600 Sobic009G119600 Sobic009G119600 Sobic004G120500--Sobic009G119600 Sobic003G441000 Sobic003G441000 Sobic005G144000--Sobic003G441000 Sobic005G144000--Sobic002G170100 Sobic005G144000--Sobic008G122800 Sobic001G279000 Sobic001G279000 Sobic005G144000--Sobic001G279000 Sobic009G242200 Sobic009G242200 Sobic005G144000--Sobic009G242200 Sobic005G144000--Sobic001G503600 Sobic004G180100 Sobic004G180100 Sobic005G144000--Sobic004G180100 Sobic008G071300 Sobic008G071300 Sobic005G144000--Sobic008G071300 Sobic002G404600 Sobic002G404600 Sobic005G144000--Sobic002G404600 Sobic004G253200--Sobic008G055600 Sobic004G253200--Sobic003G187700 Sobic004G253200--Sobic009G119600 Sobic010G189432 Sobic010G189432 Sobic004G253200--Sobic010G189432 Sobic004G253200--Sobic004G120500 Sobic001G342101 Sobic001G342101 Sobic004G253200--Sobic001G342101 Sobic004G253200--Sobic005G144000 Sobic001G213666 Sobic001G213666 Sobic004G253200--Sobic001G213666 Sobic004G253200--Sobic001G279000 Sobic003G187700--Sobic004G253200 Sobic003G187700--Sobic008G055600 Sobic003G187700--Sobic010G189432 Sobic003G187700--Sobic001G342101 Sobic003G187700--Sobic009G119600 Sobic003G187700--Sobic001G213666 Sobic003G187700--Sobic005G144000 Sobic003G187700--Sobic004G120500 Sobic003G187700--Sobic001G279000 Sobic008G055600--Sobic004G253200 Sobic008G055600--Sobic001G279000 Sobic008G055600--Sobic005G144000 Sobic008G055600--Sobic009G119600 Sobic008G055600--Sobic001G342101 Sobic008G055600--Sobic003G187700 Sobic003G244400 Sobic003G244400 Sobic008G055600--Sobic003G244400 Sobic004G358000 Sobic004G358000 Sobic008G055600--Sobic004G358000 Sobic008G055600--Sobic003G441000 Sobic003G212000 Sobic003G212000 Sobic003G234500--Sobic003G212000 Sobic003G234500--Sobic008G071300 Sobic006G267100 Sobic006G267100 Sobic003G234500--Sobic006G267100 Sobic003G234500--Sobic005G144000 Sobic003G234500--Sobic002G170100 Sobic003G234500--Sobic009G189700 Sobic003G234500--Sobic004G180100 Sobic003G234500--Sobic008G122800 Sobic003G110932 Sobic003G110932 Sobic003G234500--Sobic003G110932 Sobic002G170100--Sobic009G242200 Sobic002G380300 Sobic002G380300 Sobic002G170100--Sobic002G380300 Sobic005G170400 Sobic005G170400 Sobic002G170100--Sobic005G170400 Sobic002G170100--Sobic004G358000 Sobic003G218100 Sobic003G218100 Sobic002G170100--Sobic003G218100 Sobic003G290500 Sobic003G290500 Sobic002G170100--Sobic003G290500 Sobic003G304600 Sobic003G304600 Sobic002G170100--Sobic003G304600 Sobic002G170100--Sobic005G144000 Sobic002G283200 Sobic002G283200 Sobic002G170100--Sobic002G283200 Sobic009G189700--Sobic005G144000 Sobic009G189700--Sobic002G170100 Sobic009G189700--Sobic001G503600 Sobic009G189700--Sobic008G071300 Sobic006G272400 Sobic006G272400 Sobic009G189700--Sobic006G272400 Sobic001G039100 Sobic001G039100 Sobic009G189700--Sobic001G039100 Sobic009G189700--Sobic009G242200 Sobic009G189700--Sobic003G441000 Sobic005G042900 Sobic005G042900 Sobic009G189700--Sobic005G042900 Sobic008G122800--Sobic004G180100 Sobic008G122800--Sobic005G144000 Sobic008G122800--Sobic002G170100 Sobic008G122800--Sobic001G279000 Sobic001G234500 Sobic001G234500 Sobic008G122800--Sobic001G234500 Sobic001G183633 Sobic001G183633 Sobic008G122800--Sobic001G183633 Sobic003G013900 Sobic003G013900 Sobic008G122800--Sobic003G013900 Sobic008G122800--Sobic003G441000 Sobic009G086600 Sobic009G086600 Sobic008G122800--Sobic009G086600
Octagon: transcription factors


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