Gene annotation
| Transcriptome id | Sobic.003G234500.4,Sobic.003G234500.5,Sobic.003G234500.1,Sobic.003G234500.2 |
|---|---|
| Synonym | CA18, CA2 ,CA; BETA CA2, BETACA2, Sb03g029190, CA2 |
| Functional annotation | CA (PubMedID : 19549309) carbonic anhydrase (PubMedID : 26904072) - (PubMedID : 26976818) carbonic anhydrase, chloroplast precursor, putative, expressed |
| UniProt | A0A1B6Q509 , A0A1W0VYL1 , A0A1B6Q4X2 |
| Pfam | PF00484 |
| Panther DB | PTHR11002 PTHR11002:SF7 |
| NCBI CDD | KOG1578; Predicted carbonic anhydrase involved in protection against oxidative damage |
| KEGG Orthology | K01673; cynT, carbonic anhydrase |
| Gene Ontology | GO:0008270; zinc ion binding GO:0004089carbonate dehydratase activity |
Orthologs (automatic annotation)
| TAIR | AT1G70410 : carbonic anhydrase 2,beta carbonic anhydrase 4 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g45274.1,LOC_Os01g45274.3,LOC_Os01g45274.2 : carbonic anhydrase, chloroplast precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a028290 , Zm00025a038668 , Zm00025a028289 , Zm00025a028288 |
| Brachypodium | - |
| Barley | HORVU7Hr1G114950.11 , HORVU7Hr1G103870.18 , HORVU7Hr1G103870.19 , HORVU7Hr1G114950.10 , HORVU7Hr1G103870.12 , HORVU7Hr1G103870.14 , HORVU7Hr1G103870.15 , HORVU7Hr1G103870.16 , HORVU7Hr1G103870.17 , HORVU7Hr1G114950.12 , HORVU7Hr1G103870.21 , HORVU7Hr1G103870.20 , HORVU7Hr1G103870.22 , HORVU7Hr1G114950.5 , HORVU7Hr1G114950.4 , HORVU7Hr1G114950.7 , HORVU7Hr1G114950.6 , HORVU7Hr1G114950.1 , HORVU7Hr1G114950.3 , HORVU7Hr1G114950.2 , HORVU7Hr1G114950.9 , HORVU7Hr1G114950.8 |
| Wheat | TraesCS7B02G354800 , TraesCS7D02G443400 , TraesCS7A02G454300 |
| Populus | - |
JBrowse
| Sobic.003G234500 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G212000 | OsCML12 - Calmodulin-related calcium sensor protein, expressed | K13448: calcium-binding protein CML |
| 2 | Sobic.008G071300 | protein phosphatase 2C, putative, expressed | K17506: PPM1L, protein phosphatase 1L |
| 3 | Sobic.006G267100 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 4 | Sobic.005G144000 | glycosyltransferase, putative, expressed | - |
| 5 | Sobic.002G170100 | NAD dependent epimerase/dehydratase family protein, putative, expressed | K01784: galE, UDP-glucose 4-epimerase |
| 6 | Sobic.009G189700 | - | - |
| 7 | Sobic.004G180100 | - | - |
| 8 | Sobic.008G122800 | Recombinant SbCYP728B35 catalyzed the conversion of 5DS (5-deoxystrigol) to sorgomol in vitro.(PubMedID : 34970291)@cytochrome P450, putative, expressed | - |
| 9 | Sobic.003G110932 | - | - |
| 10 | Sobic.003G441000 | rhoGAP domain containing protein, expressed | - |
| 11 | Sobic.001G503600 | expressed protein | - |
| 12 | Sobic.007G138000 | zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed | - |
| 13 | Sobic.002G113200 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 14 | Sobic.009G157800 | transporter family protein, putative, expressed | - |
| 15 | Sobic.009G242200 | CGMC_MAPKCMGC_2.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed | K04371: ERK, mitogen-activated protein kinase 1/3 |
| 16 | Sobic.004G154100 | OsFBX346 - F-box domain containing protein, expressed | - |
| 17 | Sobic.001G039100 | oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed | - |
| 18 | Sobic.003G114600 | TKL_IRAK_CrRLK1L-1.11 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed | - |
| 19 | Sobic.001G414650 | - | K08678: UXS1, UDP-glucuronate decarboxylase |
| 20 | Sobic.002G389600 | transcription regulator, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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