Gene annotation
Transcriptome id Sobic.003G212000.1
Synonym Sb03g027170
Functional annotation OsCML12 - Calmodulin-related calcium sensor protein, expressed
UniProt C5XQA7
Pfam PF13499
Panther DB PTHR10891 PTHR10891:SF617
NCBI CDD KOG0027; Calmodulin and related proteins (EF-Hand superfamily)
KEGG Orthology K13448; calcium-binding protein CML
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G18530 : EF hand calcium-binding protein family
RAP-DB (Rice) LOC_Os01g41990.1 : OsCML12 - Calmodulin-related calcium sensor protein, expressed
MaizeGDB (Corn) Zm00025a044681 , Zm00025a028634 , Zm00025a034184
Brachypodium KQK08623
Barley HORVU3Hr1G052770.1 , HORVU3Hr1G052770.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G234500 CA(PubMedID : 19549309)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
2 Sobic.008G071300 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
3 Sobic.002G113200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.006G267100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.009G189700 - -
6 Sobic.005G144000 glycosyltransferase, putative, expressed -
7 Sobic.001G503600 expressed protein -
8 Sobic.002G389600 transcription regulator, putative, expressed -
9 Sobic.002G170100 NAD dependent epimerase/dehydratase family protein, putative, expressed K01784: galE, UDP-glucose 4-epimerase
10 Sobic.001G039100 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
11 Sobic.003G110932 - -
12 Sobic.003G441000 rhoGAP domain containing protein, expressed -
13 Sobic.001G414650 - K08678: UXS1, UDP-glucuronate decarboxylase
14 Sobic.009G242200 CGMC_MAPKCMGC_2.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
15 Sobic.006G197900 expressed protein -
16 Sobic.009G157800 transporter family protein, putative, expressed -
17 Sobic.003G114600 TKL_IRAK_CrRLK1L-1.11 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
18 Sobic.005G042900 expressed protein -
19 Sobic.002G308900 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
20 Sobic.004G180100 - -


Gene co-expression network
sample Sobic003G212000 Sobic003G212000 Sobic003G234500 Sobic003G234500 Sobic003G212000--Sobic003G234500 Sobic008G071300 Sobic008G071300 Sobic003G212000--Sobic008G071300 Sobic002G113200 Sobic002G113200 Sobic003G212000--Sobic002G113200 Sobic006G267100 Sobic006G267100 Sobic003G212000--Sobic006G267100 Sobic009G189700 Sobic009G189700 Sobic003G212000--Sobic009G189700 Sobic005G144000 Sobic005G144000 Sobic003G212000--Sobic005G144000 Sobic001G503600 Sobic001G503600 Sobic003G212000--Sobic001G503600 Sobic002G389600 Sobic002G389600 Sobic003G212000--Sobic002G389600 Sobic002G170100 Sobic002G170100 Sobic003G212000--Sobic002G170100 Sobic003G234500--Sobic003G212000 Sobic003G234500--Sobic008G071300 Sobic003G234500--Sobic006G267100 Sobic003G234500--Sobic005G144000 Sobic003G234500--Sobic002G170100 Sobic003G234500--Sobic009G189700 Sobic004G180100 Sobic004G180100 Sobic003G234500--Sobic004G180100 Sobic008G122800 Sobic008G122800 Sobic003G234500--Sobic008G122800 Sobic003G110932 Sobic003G110932 Sobic003G234500--Sobic003G110932 Sobic008G071300--Sobic006G267100 Sobic008G071300--Sobic002G170100 Sobic003G114600 Sobic003G114600 Sobic008G071300--Sobic003G114600 Sobic002G283200 Sobic002G283200 Sobic008G071300--Sobic002G283200 Sobic003G290500 Sobic003G290500 Sobic008G071300--Sobic003G290500 Sobic001G039100 Sobic001G039100 Sobic008G071300--Sobic001G039100 Sobic002G340600 Sobic002G340600 Sobic008G071300--Sobic002G340600 Sobic006G105100 Sobic006G105100 Sobic008G071300--Sobic006G105100 Sobic008G071300--Sobic001G503600 Sobic002G113200--Sobic003G212000 Sobic002G113200--Sobic008G071300 Sobic002G113200--Sobic003G234500 Sobic009G157800 Sobic009G157800 Sobic002G113200--Sobic009G157800 Sobic004G279200 Sobic004G279200 Sobic002G113200--Sobic004G279200 Sobic002G113200--Sobic001G503600 Sobic002G113200--Sobic006G267100 Sobic003G284100 Sobic003G284100 Sobic002G113200--Sobic003G284100 Sobic010G043250 Sobic010G043250 Sobic002G113200--Sobic010G043250 Sobic006G267100--Sobic008G071300 Sobic001G414650 Sobic001G414650 Sobic006G267100--Sobic001G414650 Sobic006G267100--Sobic002G340600 Sobic006G267100--Sobic003G114600 Sobic006G267100--Sobic002G283200 Sobic006G267100--Sobic006G105100 Sobic004G042501 Sobic004G042501 Sobic006G267100--Sobic004G042501 Sobic002G380300 Sobic002G380300 Sobic006G267100--Sobic002G380300 Sobic006G267100--Sobic003G290500 Sobic009G189700--Sobic005G144000 Sobic009G189700--Sobic002G170100 Sobic009G189700--Sobic001G503600 Sobic009G189700--Sobic008G071300 Sobic006G272400 Sobic006G272400 Sobic009G189700--Sobic006G272400 Sobic009G189700--Sobic001G039100 Sobic009G242200 Sobic009G242200 Sobic009G189700--Sobic009G242200 Sobic003G441000 Sobic003G441000 Sobic009G189700--Sobic003G441000 Sobic005G042900 Sobic005G042900 Sobic009G189700--Sobic005G042900 Sobic005G144000--Sobic003G441000 Sobic005G144000--Sobic002G170100 Sobic005G144000--Sobic008G122800 Sobic001G279000 Sobic001G279000 Sobic005G144000--Sobic001G279000 Sobic005G144000--Sobic009G242200 Sobic005G144000--Sobic001G503600 Sobic005G144000--Sobic004G180100 Sobic005G144000--Sobic008G071300 Sobic002G404600 Sobic002G404600 Sobic005G144000--Sobic002G404600 Sobic001G503600--Sobic001G414650 Sobic001G503600--Sobic008G071300 Sobic001G503600--Sobic005G144000 Sobic001G503600--Sobic009G242200 Sobic001G503600--Sobic002G170100 Sobic001G503600--Sobic001G039100 Sobic001G503600--Sobic002G340600 Sobic001G503600--Sobic002G380300 Sobic001G503600--Sobic002G404600 Sobic008G136601 Sobic008G136601 Sobic002G389600--Sobic008G136601 Sobic008G148600 Sobic008G148600 Sobic002G389600--Sobic008G148600 Sobic006G069766 Sobic006G069766 Sobic002G389600--Sobic006G069766 Sobic009G061500 Sobic009G061500 Sobic002G389600--Sobic009G061500 Sobic001G340800 Sobic001G340800 Sobic002G389600--Sobic001G340800 Sobic003G304600 Sobic003G304600 Sobic002G389600--Sobic003G304600 Sobic002G389600--Sobic006G105100 Sobic004G358000 Sobic004G358000 Sobic002G389600--Sobic004G358000 Sobic002G389600--Sobic002G380300 Sobic002G170100--Sobic009G242200 Sobic002G170100--Sobic002G380300 Sobic005G170400 Sobic005G170400 Sobic002G170100--Sobic005G170400 Sobic002G170100--Sobic004G358000 Sobic003G218100 Sobic003G218100 Sobic002G170100--Sobic003G218100 Sobic002G170100--Sobic003G290500 Sobic002G170100--Sobic003G304600 Sobic002G170100--Sobic005G144000 Sobic002G170100--Sobic002G283200
Octagon: transcription factors


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