Gene annotation
Transcriptome id Sobic.010G182000.1
Synonym RPT6A, ATSUG1, Sb10g023320
Functional annotation 26S protease regulatory subunit, putative, expressed
UniProt C5Z5K6
Pfam PF07724
Panther DB PTHR23073 PTHR23073:SF12
NCBI CDD -
KEGG Orthology K03066; PSMC5, 26S proteasome regulatory subunit T6
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT5G19990 : regulatory particle triple-A ATPase 6A
RAP-DB (Rice) LOC_Os02g11050.1 : 26S protease regulatory subunit, putative, expressed
MaizeGDB (Corn) Zm00025a034599
Brachypodium KQK17803 , KQJ93953
Barley HORVU7Hr1G084550.3 , HORVU7Hr1G084550.2 , HORVU7Hr1G084550.1 , HORVU7Hr1G084550.5 , HORVU7Hr1G084550.4
Wheat TraesCS7A02G372600 , TraesCS7A02G372600 , TraesCS6B02G207100 , TraesCS7D02G350300 , TraesCS6D02G166700 , TraesCS7B02G254400 , TraesCS6A02G177600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G420100 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
2 Sobic.003G423700 endonuclease, putative, expressed K08991: crossover junction endonuclease MUS81
3 Sobic.008G156600 Leucine Rich Repeat family protein, expressed -
4 Sobic.008G104000 cyclin, putative, expressed K06627: cyclin-A
5 Sobic.001G072000 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
6 Sobic.009G163100 kinesin motor domain containing protein, putative, expressed K10403: kinesin family member 22
7 Sobic.001G400000 NAD dependent epimerase/dehydratase family protein, putative, expressed K12448: UXE, UDP-arabinose 4-epimerase
8 Sobic.002G172401 - K07904: Ras-related protein Rab-11A
9 Sobic.005G050400 syntaxin 6, putative, expressed -
10 Sobic.004G284800 protein kinase, putative, expressed K08867: WNK, WNK lysine deficient protein kinase
11 Sobic.004G007400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
12 Sobic.003G293400 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
13 Sobic.001G126800 WD domain, G-beta repeat domain containing protein, expressed K11790: DTL, CDT2, denticleless
14 Sobic.004G241300 kinesin motor domain containing protein, putative, expressed K10395: kinesin family member 4
15 Sobic.004G279200 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
16 Sobic.001G387300 exostosin family domain containing protein, expressed -
17 Sobic.006G265800 OsFBX154 - F-box domain containing protein, expressed -
18 Sobic.009G087100 cyclin-A1, putative, expressed K06627: cyclin-A
19 Sobic.003G013700 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
20 Sobic.003G089100 WD domain, G-beta repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic010G182000 Sobic010G182000 Sobic002G420100 Sobic002G420100 Sobic010G182000--Sobic002G420100 Sobic003G423700 Sobic003G423700 Sobic010G182000--Sobic003G423700 Sobic008G156600 Sobic008G156600 Sobic010G182000--Sobic008G156600 Sobic008G104000 Sobic008G104000 Sobic010G182000--Sobic008G104000 Sobic001G072000 Sobic001G072000 Sobic010G182000--Sobic001G072000 Sobic009G163100 Sobic009G163100 Sobic010G182000--Sobic009G163100 Sobic001G400000 Sobic001G400000 Sobic010G182000--Sobic001G400000 Sobic002G172401 Sobic002G172401 Sobic010G182000--Sobic002G172401 Sobic005G050400 Sobic005G050400 Sobic010G182000--Sobic005G050400 Sobic010G253200 Sobic010G253200 Sobic002G420100--Sobic010G253200 Sobic002G420100--Sobic010G182000 Sobic004G241300 Sobic004G241300 Sobic002G420100--Sobic004G241300 Sobic002G420100--Sobic003G423700 Sobic002G420100--Sobic008G156600 Sobic003G293400 Sobic003G293400 Sobic002G420100--Sobic003G293400 Sobic001G131900 Sobic001G131900 Sobic002G420100--Sobic001G131900 Sobic002G420100--Sobic001G400000 Sobic002G420100--Sobic008G104000 Sobic001G126800 Sobic001G126800 Sobic003G423700--Sobic001G126800 Sobic003G423700--Sobic004G241300 Sobic003G423700--Sobic008G104000 Sobic003G423700--Sobic008G156600 Sobic003G423700--Sobic002G420100 Sobic003G423700--Sobic009G163100 Sobic003G423700--Sobic010G182000 Sobic008G171900 Sobic008G171900 Sobic003G423700--Sobic008G171900 Sobic003G423700--Sobic010G253200 Sobic008G156600--Sobic009G163100 Sobic008G156600--Sobic005G050400 Sobic008G156600--Sobic001G072000 Sobic001G112600 Sobic001G112600 Sobic008G156600--Sobic001G112600 Sobic005G020600 Sobic005G020600 Sobic008G156600--Sobic005G020600 Sobic008G156600--Sobic008G171900 Sobic008G156600--Sobic004G241300 Sobic004G007400 Sobic004G007400 Sobic008G156600--Sobic004G007400 Sobic001G322400 Sobic001G322400 Sobic008G156600--Sobic001G322400 Sobic008G104000--Sobic003G423700 Sobic008G104000--Sobic004G241300 Sobic008G104000--Sobic010G253200 Sobic008G104000--Sobic010G182000 Sobic008G104000--Sobic002G420100 Sobic008G104000--Sobic001G126800 Sobic001G248400 Sobic001G248400 Sobic008G104000--Sobic001G248400 Sobic008G104000--Sobic008G156600 Sobic008G104000--Sobic008G171900 Sobic001G072000--Sobic001G322400 Sobic001G072000--Sobic005G050400 Sobic001G072000--Sobic001G112600 Sobic004G279200 Sobic004G279200 Sobic001G072000--Sobic004G279200 Sobic001G072000--Sobic008G156600 Sobic001G432200 Sobic001G432200 Sobic001G072000--Sobic001G432200 Sobic001G072000--Sobic009G163100 Sobic009G242200 Sobic009G242200 Sobic001G072000--Sobic009G242200 Sobic004G038500 Sobic004G038500 Sobic001G072000--Sobic004G038500 Sobic009G163100--Sobic008G156600 Sobic009G163100--Sobic005G020600 Sobic009G163100--Sobic008G171900 Sobic009G163100--Sobic001G072000 Sobic002G299500 Sobic002G299500 Sobic009G163100--Sobic002G299500 Sobic009G163100--Sobic005G050400 Sobic001G435700 Sobic001G435700 Sobic009G163100--Sobic001G435700 Sobic009G163100--Sobic001G112600 Sobic009G163100--Sobic001G322400 Sobic004G113600 Sobic004G113600 Sobic001G400000--Sobic004G113600 Sobic001G400000--Sobic001G112600 Sobic001G384200 Sobic001G384200 Sobic001G400000--Sobic001G384200 Sobic001G400000--Sobic005G050400 Sobic003G244400 Sobic003G244400 Sobic001G400000--Sobic003G244400 Sobic006G265800 Sobic006G265800 Sobic001G400000--Sobic006G265800 Sobic001G400000--Sobic004G007400 Sobic008G055600 Sobic008G055600 Sobic001G400000--Sobic008G055600 Sobic001G400000--Sobic008G156600 Sobic002G172401--Sobic005G020600 Sobic002G172401--Sobic008G156600 Sobic002G172401--Sobic005G050400 Sobic002G172401--Sobic009G163100 Sobic002G172401--Sobic001G072000 Sobic002G172401--Sobic001G112600 Sobic002G172401--Sobic004G113600 Sobic004G062200 Sobic004G062200 Sobic002G172401--Sobic004G062200 Sobic002G172401--Sobic004G279200 Sobic005G050400--Sobic001G112600 Sobic005G050400--Sobic001G072000 Sobic005G050400--Sobic008G156600 Sobic005G050400--Sobic009G242200 Sobic002G170100 Sobic002G170100 Sobic005G050400--Sobic002G170100 Sobic003G441000 Sobic003G441000 Sobic005G050400--Sobic003G441000 Sobic005G050400--Sobic004G007400 Sobic005G144000 Sobic005G144000 Sobic005G050400--Sobic005G144000 Sobic005G050400--Sobic009G163100
Octagon: transcription factors


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