Gene annotation
Transcriptome id Sobic.002G172401.1
Synonym -
Functional annotation -
UniProt A0A1W0W4P3
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF448
NCBI CDD KOG0087; GTPase Rab11/YPT3, small G protein superfamily
KEGG Orthology K07904; Ras-related protein Rab-11A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT5G60860 : RAB GTPase homolog A1F
RAP-DB (Rice) LOC_Os09g15790.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a036613 , Zm00025a044235 , Zm00025a042339 , Zm00025a046500 , Zm00025a044575 , Zm00025a013755 , Zm00025a051086
Brachypodium KQK04867 , KQJ98137 , KQK18040 , KQJ98073 , KQK09739 , PNT64397
Barley HORVU7Hr1G089120.1 , HORVU7Hr1G089120.2 , HORVU5Hr1G056470.1 , HORVU3Hr1G071740.6 , HORVU3Hr1G071740.4 , HORVU3Hr1G071740.5 , HORVU3Hr1G071740.2 , HORVU3Hr1G071740.3 , HORVU3Hr1G071740.1
Wheat TraesCS7B02G273300 , TraesCS5A02G184100 , TraesCS3A02G289600 , TraesCS1D02G405900 , TraesCS5D02G188900 , TraesCS7D02G368300 , TraesCS3B02G324300 , TraesCS5B02G182200 , TraesCS1A02G398400 , TraesCS1B02G426300 , TraesCS3D02G289400 , TraesCS7A02G354400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G020600 Mad3/BUB1 homology region 1 domain containing protein, expressed -
2 Sobic.008G156600 Leucine Rich Repeat family protein, expressed -
3 Sobic.005G050400 syntaxin 6, putative, expressed -
4 Sobic.009G163100 kinesin motor domain containing protein, putative, expressed K10403: kinesin family member 22
5 Sobic.001G072000 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
6 Sobic.001G112600 Actin(PubMedID : 27325899)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@actin, putative, expressed K10355: actin, other eukaryote
7 Sobic.004G113600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
8 Sobic.004G062200 expressed protein -
9 Sobic.004G279200 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
10 Sobic.001G435700 HVA22, putative, expressed K17338: receptor expression-enhancing protein 1/2/3/4
11 Sobic.002G299500 expressed protein -
12 Sobic.008G171900 kinesin motor domain containing protein, putative, expressed K10406: kinesin family member C2/C3
13 Sobic.001G322400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
14 Sobic.009G242200 CGMC_MAPKCMGC_2.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
15 Sobic.004G241300 kinesin motor domain containing protein, putative, expressed K10395: kinesin family member 4
16 Sobic.003G013700 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
17 Sobic.003G376900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pectinesterase, putative, expressed -
18 Sobic.006G171600 ZOS4-10 - C2H2 zinc finger protein, expressed -
19 Sobic.009G242600 ATPCME, putative, expressed K15889: prenylcysteine alpha-carboxyl methylesterase
20 Sobic.002G087200 OsFBX231 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic002G172401 Sobic002G172401 Sobic005G020600 Sobic005G020600 Sobic002G172401--Sobic005G020600 Sobic008G156600 Sobic008G156600 Sobic002G172401--Sobic008G156600 Sobic005G050400 Sobic005G050400 Sobic002G172401--Sobic005G050400 Sobic009G163100 Sobic009G163100 Sobic002G172401--Sobic009G163100 Sobic001G072000 Sobic001G072000 Sobic002G172401--Sobic001G072000 Sobic001G112600 Sobic001G112600 Sobic002G172401--Sobic001G112600 Sobic004G113600 Sobic004G113600 Sobic002G172401--Sobic004G113600 Sobic004G062200 Sobic004G062200 Sobic002G172401--Sobic004G062200 Sobic004G279200 Sobic004G279200 Sobic002G172401--Sobic004G279200 Sobic005G020600--Sobic009G163100 Sobic002G299500 Sobic002G299500 Sobic005G020600--Sobic002G299500 Sobic005G020600--Sobic008G156600 Sobic005G020600--Sobic001G072000 Sobic009G202000 Sobic009G202000 Sobic005G020600--Sobic009G202000 Sobic008G171900 Sobic008G171900 Sobic005G020600--Sobic008G171900 Sobic001G432200 Sobic001G432200 Sobic005G020600--Sobic001G432200 Sobic001G322400 Sobic001G322400 Sobic005G020600--Sobic001G322400 Sobic005G020600--Sobic001G112600 Sobic008G156600--Sobic009G163100 Sobic008G156600--Sobic005G050400 Sobic008G156600--Sobic001G072000 Sobic008G156600--Sobic001G112600 Sobic008G156600--Sobic005G020600 Sobic008G156600--Sobic008G171900 Sobic004G241300 Sobic004G241300 Sobic008G156600--Sobic004G241300 Sobic004G007400 Sobic004G007400 Sobic008G156600--Sobic004G007400 Sobic008G156600--Sobic001G322400 Sobic005G050400--Sobic001G112600 Sobic005G050400--Sobic001G072000 Sobic005G050400--Sobic008G156600 Sobic009G242200 Sobic009G242200 Sobic005G050400--Sobic009G242200 Sobic002G170100 Sobic002G170100 Sobic005G050400--Sobic002G170100 Sobic003G441000 Sobic003G441000 Sobic005G050400--Sobic003G441000 Sobic005G050400--Sobic004G007400 Sobic005G144000 Sobic005G144000 Sobic005G050400--Sobic005G144000 Sobic005G050400--Sobic009G163100 Sobic009G163100--Sobic008G156600 Sobic009G163100--Sobic005G020600 Sobic009G163100--Sobic008G171900 Sobic009G163100--Sobic001G072000 Sobic009G163100--Sobic002G299500 Sobic009G163100--Sobic005G050400 Sobic001G435700 Sobic001G435700 Sobic009G163100--Sobic001G435700 Sobic009G163100--Sobic001G112600 Sobic009G163100--Sobic001G322400 Sobic001G072000--Sobic001G322400 Sobic001G072000--Sobic005G050400 Sobic001G072000--Sobic001G112600 Sobic001G072000--Sobic004G279200 Sobic001G072000--Sobic008G156600 Sobic001G072000--Sobic001G432200 Sobic001G072000--Sobic009G163100 Sobic001G072000--Sobic009G242200 Sobic004G038500 Sobic004G038500 Sobic001G072000--Sobic004G038500 Sobic001G112600--Sobic005G050400 Sobic001G112600--Sobic009G242200 Sobic001G112600--Sobic003G441000 Sobic001G112600--Sobic002G170100 Sobic001G414650 Sobic001G414650 Sobic001G112600--Sobic001G414650 Sobic003G244400 Sobic003G244400 Sobic001G112600--Sobic003G244400 Sobic008G055200 Sobic008G055200 Sobic001G112600--Sobic008G055200 Sobic004G358000 Sobic004G358000 Sobic001G112600--Sobic004G358000 Sobic001G112600--Sobic005G144000 Sobic004G113600--Sobic001G112600 Sobic004G113600--Sobic003G244400 Sobic004G113600--Sobic004G358000 Sobic004G113600--Sobic009G242200 Sobic004G113600--Sobic002G170100 Sobic004G113600--Sobic005G050400 Sobic001G384200 Sobic001G384200 Sobic004G113600--Sobic001G384200 Sobic001G400000 Sobic001G400000 Sobic004G113600--Sobic001G400000 Sobic005G054150 Sobic005G054150 Sobic004G113600--Sobic005G054150 Sobic006G171600 Sobic006G171600 Sobic004G062200--Sobic006G171600 Sobic004G062200--Sobic004G279200 Sobic004G062200--Sobic001G072000 Sobic004G062200--Sobic001G112600 Sobic006G070564 Sobic006G070564 Sobic004G062200--Sobic006G070564 Sobic010G052900 Sobic010G052900 Sobic004G062200--Sobic010G052900 Sobic004G062200--Sobic005G050400 Sobic006G115700 Sobic006G115700 Sobic004G062200--Sobic006G115700 Sobic007G063800 Sobic007G063800 Sobic004G062200--Sobic007G063800 Sobic004G279200--Sobic001G072000 Sobic004G279200--Sobic006G070564 Sobic004G279200--Sobic005G050400 Sobic004G279200--Sobic001G322400 Sobic004G279200--Sobic001G414650 Sobic004G279200--Sobic004G062200 Sobic006G267100 Sobic006G267100 Sobic004G279200--Sobic006G267100 Sobic004G279200--Sobic006G171600 Sobic004G279200--Sobic001G112600
Octagon: transcription factors


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