Gene annotation
Transcriptome id Sobic.003G376900.1
Synonym Sb03g041680
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pectinesterase, putative, expressed
UniProt A0A1B6Q7A6
Pfam PF01095
Panther DB PTHR31707 PTHR31707:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005618; cell wall


Orthologs (automatic annotation)
TAIR AT5G09760 : Plant invertase/pectin methylesterase inhibitor superfamily
RAP-DB (Rice) LOC_Os01g65790.1 : pectinesterase, putative, expressed
MaizeGDB (Corn) Zm00025a026574 , Zm00025a030727
Brachypodium KQK10881 , KQJ82959
Barley HORVU3Hr1G091360.6 , HORVU3Hr1G091360.7 , HORVU3Hr1G091360.4 , HORVU3Hr1G091360.5 , HORVU3Hr1G091360.2 , HORVU3Hr1G091360.3 , HORVU3Hr1G091360.1
Wheat TraesCS3D02G404000 , TraesCS2A02G344200
Populus -


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cDNA sequences
Sobic.003G376900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G299500 expressed protein -
2 Sobic.009G163100 kinesin motor domain containing protein, putative, expressed K10403: kinesin family member 22
3 Sobic.003G352900 OsFtsH3 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein
4 Sobic.008G171900 kinesin motor domain containing protein, putative, expressed K10406: kinesin family member C2/C3
5 Sobic.001G385300 auxin-independent growth promoter protein, putative, expressed -
6 Sobic.005G020600 Mad3/BUB1 homology region 1 domain containing protein, expressed -
7 Sobic.001G435700 HVA22, putative, expressed K17338: receptor expression-enhancing protein 1/2/3/4
8 Sobic.005G045800 serine/threonine-protein kinase WNK4, putative, expressed K08867: WNK, WNK lysine deficient protein kinase
9 Sobic.001G072000 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
10 Sobic.008G156600 Leucine Rich Repeat family protein, expressed -
11 Sobic.001G076600 hydrolase, acting on carbon-nitrogen, putative, expressed -
12 Sobic.006G196100 expressed protein -
13 Sobic.004G093100 protein kinase family protein, putative, expressed -
14 Sobic.009G202000 GATA zinc finger domain containing protein, expressed -
15 Sobic.001G322400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
16 Sobic.010G010201 - -
17 Sobic.001G432200 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
18 Sobic.004G062200 expressed protein -
19 Sobic.008G007600 - -
20 Sobic.010G128350 - -


Gene co-expression network
sample Sobic003G376900 Sobic003G376900 Sobic002G299500 Sobic002G299500 Sobic003G376900--Sobic002G299500 Sobic009G163100 Sobic009G163100 Sobic003G376900--Sobic009G163100 Sobic003G352900 Sobic003G352900 Sobic003G376900--Sobic003G352900 Sobic008G171900 Sobic008G171900 Sobic003G376900--Sobic008G171900 Sobic001G385300 Sobic001G385300 Sobic003G376900--Sobic001G385300 Sobic005G020600 Sobic005G020600 Sobic003G376900--Sobic005G020600 Sobic001G435700 Sobic001G435700 Sobic003G376900--Sobic001G435700 Sobic005G045800 Sobic005G045800 Sobic003G376900--Sobic005G045800 Sobic001G072000 Sobic001G072000 Sobic003G376900--Sobic001G072000 Sobic002G299500--Sobic008G171900 Sobic002G299500--Sobic003G376900 Sobic002G299500--Sobic009G163100 Sobic002G299500--Sobic005G020600 Sobic008G007600 Sobic008G007600 Sobic002G299500--Sobic008G007600 Sobic002G299500--Sobic003G352900 Sobic004G250800 Sobic004G250800 Sobic002G299500--Sobic004G250800 Sobic009G202000 Sobic009G202000 Sobic002G299500--Sobic009G202000 Sobic002G299500--Sobic001G072000 Sobic008G156600 Sobic008G156600 Sobic009G163100--Sobic008G156600 Sobic009G163100--Sobic005G020600 Sobic009G163100--Sobic008G171900 Sobic009G163100--Sobic001G072000 Sobic009G163100--Sobic002G299500 Sobic005G050400 Sobic005G050400 Sobic009G163100--Sobic005G050400 Sobic009G163100--Sobic001G435700 Sobic001G112600 Sobic001G112600 Sobic009G163100--Sobic001G112600 Sobic001G322400 Sobic001G322400 Sobic009G163100--Sobic001G322400 Sobic007G144100 Sobic007G144100 Sobic003G352900--Sobic007G144100 Sobic003G352900--Sobic002G299500 Sobic001G076600 Sobic001G076600 Sobic003G352900--Sobic001G076600 Sobic003G352900--Sobic003G376900 Sobic009G201000 Sobic009G201000 Sobic003G352900--Sobic009G201000 Sobic003G352900--Sobic005G045800 Sobic003G352900--Sobic009G163100 Sobic003G352900--Sobic001G385300 Sobic003G352900--Sobic008G007600 Sobic008G171900--Sobic002G299500 Sobic008G171900--Sobic009G163100 Sobic004G241300 Sobic004G241300 Sobic008G171900--Sobic004G241300 Sobic008G171900--Sobic001G435700 Sobic008G171900--Sobic008G156600 Sobic008G171900--Sobic005G020600 Sobic008G171900--Sobic003G376900 Sobic008G171900--Sobic008G007600 Sobic008G171900--Sobic001G385300 Sobic001G385300--Sobic003G376900 Sobic001G385300--Sobic002G299500 Sobic001G385300--Sobic003G352900 Sobic001G385300--Sobic009G163100 Sobic001G385300--Sobic008G171900 Sobic001G385300--Sobic005G045800 Sobic007G141600 Sobic007G141600 Sobic001G385300--Sobic007G141600 Sobic001G385300--Sobic005G020600 Sobic004G298600 Sobic004G298600 Sobic001G385300--Sobic004G298600 Sobic005G020600--Sobic009G163100 Sobic005G020600--Sobic002G299500 Sobic005G020600--Sobic008G156600 Sobic005G020600--Sobic001G072000 Sobic005G020600--Sobic009G202000 Sobic005G020600--Sobic008G171900 Sobic001G432200 Sobic001G432200 Sobic005G020600--Sobic001G432200 Sobic005G020600--Sobic001G322400 Sobic005G020600--Sobic001G112600 Sobic001G435700--Sobic008G171900 Sobic001G435700--Sobic009G163100 Sobic001G435700--Sobic008G156600 Sobic004G093100 Sobic004G093100 Sobic001G435700--Sobic004G093100 Sobic001G435700--Sobic005G020600 Sobic001G435700--Sobic004G241300 Sobic001G435700--Sobic003G376900 Sobic001G435700--Sobic005G050400 Sobic010G238300 Sobic010G238300 Sobic001G435700--Sobic010G238300 Sobic005G045800--Sobic003G352900 Sobic005G045800--Sobic003G376900 Sobic005G045800--Sobic001G385300 Sobic005G045800--Sobic002G299500 Sobic001G131900 Sobic001G131900 Sobic005G045800--Sobic001G131900 Sobic003G200000 Sobic003G200000 Sobic005G045800--Sobic003G200000 Sobic005G045800--Sobic008G171900 Sobic005G045800--Sobic009G163100 Sobic005G045800--Sobic007G144100 Sobic001G072000--Sobic001G322400 Sobic001G072000--Sobic005G050400 Sobic001G072000--Sobic001G112600 Sobic004G279200 Sobic004G279200 Sobic001G072000--Sobic004G279200 Sobic001G072000--Sobic008G156600 Sobic001G072000--Sobic001G432200 Sobic001G072000--Sobic009G163100 Sobic009G242200 Sobic009G242200 Sobic001G072000--Sobic009G242200 Sobic004G038500 Sobic004G038500 Sobic001G072000--Sobic004G038500
Octagon: transcription factors


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