Gene annotation
Transcriptome id Sobic.001G385300.2,Sobic.001G385300.1
Synonym Sb01g036540
Functional annotation auxin-independent growth promoter protein, putative, expressed
UniProt C5X1P6 , A0A1Z5SA97
Pfam PF10250
Panther DB PTHR31741 PTHR31741:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G14020 : O-fucosyltransferase family protein
RAP-DB (Rice) LOC_Os03g21090.1 : auxin-independent growth promoter protein, putative, expressed
MaizeGDB (Corn) Zm00025a002294
Brachypodium KQK21866
Barley HORVU4Hr1G051230.13 , HORVU4Hr1G051230.12 , HORVU4Hr1G051230.11 , HORVU4Hr1G051230.10 , HORVU4Hr1G051230.7 , HORVU4Hr1G051230.6 , HORVU4Hr1G051230.5 , HORVU4Hr1G051230.4 , HORVU4Hr1G051230.3 , HORVU4Hr1G051230.2 , HORVU4Hr1G051230.1 , HORVU4Hr1G051230.9 , HORVU4Hr1G051230.8
Wheat TraesCS4B02G173400 , TraesCS4B02G173400 , TraesCS4D02G175500 , TraesCS4D02G175500 , TraesCS4A02G131200 , TraesCS4A02G131200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G376900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pectinesterase, putative, expressed -
2 Sobic.002G299500 expressed protein -
3 Sobic.003G352900 OsFtsH3 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein
4 Sobic.009G163100 kinesin motor domain containing protein, putative, expressed K10403: kinesin family member 22
5 Sobic.008G171900 kinesin motor domain containing protein, putative, expressed K10406: kinesin family member C2/C3
6 Sobic.005G045800 serine/threonine-protein kinase WNK4, putative, expressed K08867: WNK, WNK lysine deficient protein kinase
7 Sobic.007G141600 ZOS8-05 - C2H2 zinc finger protein, expressed -
8 Sobic.005G020600 Mad3/BUB1 homology region 1 domain containing protein, expressed -
9 Sobic.004G298600 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
10 Sobic.001G308500 glycosyltransferase family protein 1, putative, expressed -
11 Sobic.001G131900 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
12 Sobic.001G435700 HVA22, putative, expressed K17338: receptor expression-enhancing protein 1/2/3/4
13 Sobic.001G076600 hydrolase, acting on carbon-nitrogen, putative, expressed -
14 Sobic.006G189000 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
15 Sobic.005G060100 growth regulator related protein, putative, expressed -
16 Sobic.008G156600 Leucine Rich Repeat family protein, expressed -
17 Sobic.006G265800 OsFBX154 - F-box domain containing protein, expressed -
18 Sobic.007G102300 formin, putative, expressed -
19 Sobic.009G214500 IQ calmodulin-binding motif domain containing protein, expressed -
20 Sobic.001G380700 bZIP transcription factor family protein, putative, expressed -


Gene co-expression network
sample Sobic001G385300 Sobic001G385300 Sobic003G376900 Sobic003G376900 Sobic001G385300--Sobic003G376900 Sobic002G299500 Sobic002G299500 Sobic001G385300--Sobic002G299500 Sobic003G352900 Sobic003G352900 Sobic001G385300--Sobic003G352900 Sobic009G163100 Sobic009G163100 Sobic001G385300--Sobic009G163100 Sobic008G171900 Sobic008G171900 Sobic001G385300--Sobic008G171900 Sobic005G045800 Sobic005G045800 Sobic001G385300--Sobic005G045800 Sobic007G141600 Sobic007G141600 Sobic001G385300--Sobic007G141600 Sobic005G020600 Sobic005G020600 Sobic001G385300--Sobic005G020600 Sobic004G298600 Sobic004G298600 Sobic001G385300--Sobic004G298600 Sobic003G376900--Sobic002G299500 Sobic003G376900--Sobic009G163100 Sobic003G376900--Sobic003G352900 Sobic003G376900--Sobic008G171900 Sobic003G376900--Sobic001G385300 Sobic003G376900--Sobic005G020600 Sobic001G435700 Sobic001G435700 Sobic003G376900--Sobic001G435700 Sobic003G376900--Sobic005G045800 Sobic001G072000 Sobic001G072000 Sobic003G376900--Sobic001G072000 Sobic002G299500--Sobic008G171900 Sobic002G299500--Sobic003G376900 Sobic002G299500--Sobic009G163100 Sobic002G299500--Sobic005G020600 Sobic008G007600 Sobic008G007600 Sobic002G299500--Sobic008G007600 Sobic002G299500--Sobic003G352900 Sobic004G250800 Sobic004G250800 Sobic002G299500--Sobic004G250800 Sobic009G202000 Sobic009G202000 Sobic002G299500--Sobic009G202000 Sobic002G299500--Sobic001G072000 Sobic007G144100 Sobic007G144100 Sobic003G352900--Sobic007G144100 Sobic003G352900--Sobic002G299500 Sobic001G076600 Sobic001G076600 Sobic003G352900--Sobic001G076600 Sobic003G352900--Sobic003G376900 Sobic009G201000 Sobic009G201000 Sobic003G352900--Sobic009G201000 Sobic003G352900--Sobic005G045800 Sobic003G352900--Sobic009G163100 Sobic003G352900--Sobic001G385300 Sobic003G352900--Sobic008G007600 Sobic008G156600 Sobic008G156600 Sobic009G163100--Sobic008G156600 Sobic009G163100--Sobic005G020600 Sobic009G163100--Sobic008G171900 Sobic009G163100--Sobic001G072000 Sobic009G163100--Sobic002G299500 Sobic005G050400 Sobic005G050400 Sobic009G163100--Sobic005G050400 Sobic009G163100--Sobic001G435700 Sobic001G112600 Sobic001G112600 Sobic009G163100--Sobic001G112600 Sobic001G322400 Sobic001G322400 Sobic009G163100--Sobic001G322400 Sobic008G171900--Sobic002G299500 Sobic008G171900--Sobic009G163100 Sobic004G241300 Sobic004G241300 Sobic008G171900--Sobic004G241300 Sobic008G171900--Sobic001G435700 Sobic008G171900--Sobic008G156600 Sobic008G171900--Sobic005G020600 Sobic008G171900--Sobic003G376900 Sobic008G171900--Sobic008G007600 Sobic008G171900--Sobic001G385300 Sobic005G045800--Sobic003G352900 Sobic005G045800--Sobic003G376900 Sobic005G045800--Sobic001G385300 Sobic005G045800--Sobic002G299500 Sobic001G131900 Sobic001G131900 Sobic005G045800--Sobic001G131900 Sobic003G200000 Sobic003G200000 Sobic005G045800--Sobic003G200000 Sobic005G045800--Sobic008G171900 Sobic005G045800--Sobic009G163100 Sobic005G045800--Sobic007G144100 Sobic007G141600--Sobic002G299500 Sobic007G141600--Sobic001G385300 Sobic007G141600--Sobic008G171900 Sobic007G141600--Sobic008G007600 Sobic007G141600--Sobic003G352900 Sobic007G141600--Sobic001G076600 Sobic007G141600--Sobic009G163100 Sobic007G141600--Sobic007G144100 Sobic006G265800 Sobic006G265800 Sobic007G141600--Sobic006G265800 Sobic005G020600--Sobic009G163100 Sobic005G020600--Sobic002G299500 Sobic005G020600--Sobic008G156600 Sobic005G020600--Sobic001G072000 Sobic005G020600--Sobic009G202000 Sobic005G020600--Sobic008G171900 Sobic001G432200 Sobic001G432200 Sobic005G020600--Sobic001G432200 Sobic005G020600--Sobic001G322400 Sobic005G020600--Sobic001G112600 Sobic004G298600--Sobic001G385300 Sobic004G298600--Sobic001G131900 Sobic003G293400 Sobic003G293400 Sobic004G298600--Sobic003G293400 Sobic004G026600 Sobic004G026600 Sobic004G298600--Sobic004G026600 Sobic005G060100 Sobic005G060100 Sobic004G298600--Sobic005G060100 Sobic001G308500 Sobic001G308500 Sobic004G298600--Sobic001G308500 Sobic001G433600 Sobic001G433600 Sobic004G298600--Sobic001G433600 Sobic007G105700 Sobic007G105700 Sobic004G298600--Sobic007G105700 Sobic004G298600--Sobic003G352900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.