Gene annotation
Transcriptome id Sobic.001G352800.1
Synonym Sb01g033750, PAB1
Functional annotation peptidase, T1 family, putative, expressed
UniProt C5WXR7
Pfam PF10584 PF00227
Panther DB PTHR11599 PTHR11599:SF16
NCBI CDD KOG0181; 20S proteasome, regulatory subunit alpha type PSMA2/PRE8
KEGG Orthology K02726; 20S proteasome subunit alpha 2
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process GO:0004175endopeptidase activity GO:0005839proteasome core complex GO:0004298threonine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G16470 : proteasome subunit PAB1
RAP-DB (Rice) LOC_Os03g26970.1 : peptidase, T1 family, putative, expressed
MaizeGDB (Corn) Zm00025a021033 , Zm00025a021029 , Zm00025a000977 , Zm00025a045568 , Zm00025a027978 , Zm00025a027733 , Zm00025a032082 , Zm00025a032084 , Zm00025a021030
Brachypodium KQK00469
Barley HORVU3Hr1G068660.4 , HORVU3Hr1G068660.7 , HORVU3Hr1G068660.6 , HORVU3Hr1G068660.5 , HORVU3Hr1G068660.3 , HORVU3Hr1G068660.2 , HORVU3Hr1G068660.1 , HORVU3Hr1G068630.4 , HORVU3Hr1G068630.1 , HORVU3Hr1G068630.2 , HORVU3Hr1G068630.3 , HORVU2Hr1G036390.5 , HORVU2Hr1G036390.4 , HORVU2Hr1G036390.7 , HORVU2Hr1G036390.6 , HORVU2Hr1G036390.1 , HORVU2Hr1G036390.3 , HORVU2Hr1G036390.2 , HORVU2Hr1G036390.9 , HORVU2Hr1G036390.8
Wheat TraesCS2B02G217800 , TraesCS2A02G189400 , TraesCS2D02G198400 , TraesCS3B02G319500 , TraesCS3B02G319500 , TraesCS3B02G319500 , TraesCS3B02G319500 , TraesCS3A02G285600 , TraesCS3D02G285400
Populus -


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cDNA sequences
Sobic.001G352800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G219800 methyltransferase, putative, expressed -
2 Sobic.002G232400 clathrin adaptor complex small chain domain containing protein, expressed -
3 Sobic.002G255400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K09569: FK506-binding protein 2
4 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
5 Sobic.003G075200 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
6 Sobic.003G085500 signal peptidase complex subunit 3, putative, expressed K12948: SPCS3, signal peptidase complex subunit 3
7 Sobic.002G090500 calreticulin precursor protein, putative, expressed K08057: calreticulin
8 Sobic.001G192700 major facilitator superfamily domain-containing protein 5, putative, expressed -
9 Sobic.001G126800 WD domain, G-beta repeat domain containing protein, expressed K11790: DTL, CDT2, denticleless
10 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
11 Sobic.010G002800 AGAP000326-PA, putative, expressed K18163: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6
12 Sobic.002G153000 oxidoreductase domain protein, putative, expressed -
13 Sobic.008G132200 tetratricopeptide repeat domain containing protein, expressed -
14 Sobic.001G091701 - -
15 Sobic.003G423700 endonuclease, putative, expressed K08991: crossover junction endonuclease MUS81
16 Sobic.010G188900 PPR repeat domain containing protein, putative, expressed -
17 Sobic.004G017900 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
18 Sobic.003G049200 NADH-cytochrome b5 reductase, putative, expressed K00326: cytochrome-b5 reductase
19 Sobic.002G392400 expressed protein -
20 Sobic.001G347700 protein phosphotase protein, putative, expressed -


Gene co-expression network
sample Sobic001G352800 Sobic001G352800 Sobic001G219800 Sobic001G219800 Sobic001G352800--Sobic001G219800 Sobic002G232400 Sobic002G232400 Sobic001G352800--Sobic002G232400 Sobic002G255400 Sobic002G255400 Sobic001G352800--Sobic002G255400 Sobic003G260600 Sobic003G260600 Sobic001G352800--Sobic003G260600 Sobic003G075200 Sobic003G075200 Sobic001G352800--Sobic003G075200 Sobic003G085500 Sobic003G085500 Sobic001G352800--Sobic003G085500 Sobic002G090500 Sobic002G090500 Sobic001G352800--Sobic002G090500 Sobic001G192700 Sobic001G192700 Sobic001G352800--Sobic001G192700 Sobic001G126800 Sobic001G126800 Sobic001G352800--Sobic001G126800 Sobic001G219800--Sobic001G352800 Sobic001G219800--Sobic001G192700 Sobic003G016300 Sobic003G016300 Sobic001G219800--Sobic003G016300 Sobic001G219800--Sobic002G255400 Sobic002G217500 Sobic002G217500 Sobic001G219800--Sobic002G217500 Sobic003G074900 Sobic003G074900 Sobic001G219800--Sobic003G074900 Sobic002G420600 Sobic002G420600 Sobic001G219800--Sobic002G420600 Sobic002G352200 Sobic002G352200 Sobic001G219800--Sobic002G352200 Sobic001G219800--Sobic003G075200 Sobic002G153000 Sobic002G153000 Sobic002G232400--Sobic002G153000 Sobic002G232400--Sobic002G090500 Sobic002G232400--Sobic001G352800 Sobic002G232400--Sobic001G192700 Sobic002G268700 Sobic002G268700 Sobic002G232400--Sobic002G268700 Sobic010G002800 Sobic010G002800 Sobic002G232400--Sobic010G002800 Sobic004G218600 Sobic004G218600 Sobic002G232400--Sobic004G218600 Sobic008G084100 Sobic008G084100 Sobic002G232400--Sobic008G084100 Sobic010G018500 Sobic010G018500 Sobic002G232400--Sobic010G018500 Sobic002G255400--Sobic003G260600 Sobic003G089100 Sobic003G089100 Sobic002G255400--Sobic003G089100 Sobic007G014700 Sobic007G014700 Sobic002G255400--Sobic007G014700 Sobic008G018300 Sobic008G018300 Sobic002G255400--Sobic008G018300 Sobic002G255400--Sobic002G420600 Sobic003G201500 Sobic003G201500 Sobic002G255400--Sobic003G201500 Sobic003G013700 Sobic003G013700 Sobic002G255400--Sobic003G013700 Sobic002G255400--Sobic002G352200 Sobic001G387200 Sobic001G387200 Sobic002G255400--Sobic001G387200 Sobic003G260600--Sobic002G255400 Sobic003G260600--Sobic003G201500 Sobic003G260600--Sobic003G089100 Sobic008G132200 Sobic008G132200 Sobic003G260600--Sobic008G132200 Sobic001G378800 Sobic001G378800 Sobic003G260600--Sobic001G378800 Sobic003G372200 Sobic003G372200 Sobic003G260600--Sobic003G372200 Sobic003G260600--Sobic002G420600 Sobic008G072500 Sobic008G072500 Sobic003G260600--Sobic008G072500 Sobic003G260600--Sobic007G014700 Sobic004G356300 Sobic004G356300 Sobic003G075200--Sobic004G356300 Sobic003G075200--Sobic001G352800 Sobic008G057900 Sobic008G057900 Sobic003G075200--Sobic008G057900 Sobic010G188900 Sobic010G188900 Sobic003G075200--Sobic010G188900 Sobic009G220000 Sobic009G220000 Sobic003G075200--Sobic009G220000 Sobic003G075200--Sobic002G153000 Sobic003G075200--Sobic002G090500 Sobic004G007700 Sobic004G007700 Sobic003G075200--Sobic004G007700 Sobic006G153200 Sobic006G153200 Sobic003G075200--Sobic006G153200 Sobic001G485300 Sobic001G485300 Sobic003G085500--Sobic001G485300 Sobic003G085500--Sobic001G352800 Sobic003G085500--Sobic010G002800 Sobic004G354100 Sobic004G354100 Sobic003G085500--Sobic004G354100 Sobic007G022700 Sobic007G022700 Sobic003G085500--Sobic007G022700 Sobic002G392400 Sobic002G392400 Sobic003G085500--Sobic002G392400 Sobic002G276800 Sobic002G276800 Sobic003G085500--Sobic002G276800 Sobic003G388700 Sobic003G388700 Sobic003G085500--Sobic003G388700 Sobic004G186100 Sobic004G186100 Sobic003G085500--Sobic004G186100 Sobic002G090500--Sobic002G153000 Sobic002G090500--Sobic002G232400 Sobic002G090500--Sobic001G352800 Sobic002G090500--Sobic004G356300 Sobic002G090500--Sobic003G075200 Sobic002G090500--Sobic004G218600 Sobic001G011000 Sobic001G011000 Sobic002G090500--Sobic001G011000 Sobic001G543400 Sobic001G543400 Sobic002G090500--Sobic001G543400 Sobic002G090500--Sobic008G057900 Sobic001G192700--Sobic001G219800 Sobic001G192700--Sobic003G016300 Sobic001G192700--Sobic001G352800 Sobic001G192700--Sobic002G232400 Sobic001G135200 Sobic001G135200 Sobic001G192700--Sobic001G135200 Sobic001G348000 Sobic001G348000 Sobic001G192700--Sobic001G348000 Sobic004G117400 Sobic004G117400 Sobic001G192700--Sobic004G117400 Sobic001G091701 Sobic001G091701 Sobic001G192700--Sobic001G091701 Sobic002G387800 Sobic002G387800 Sobic001G192700--Sobic002G387800 Sobic003G423700 Sobic003G423700 Sobic001G126800--Sobic003G423700 Sobic004G241300 Sobic004G241300 Sobic001G126800--Sobic004G241300 Sobic008G104000 Sobic008G104000 Sobic001G126800--Sobic008G104000 Sobic002G420100 Sobic002G420100 Sobic001G126800--Sobic002G420100 Sobic001G248400 Sobic001G248400 Sobic001G126800--Sobic001G248400 Sobic010G182000 Sobic010G182000 Sobic001G126800--Sobic010G182000 Sobic002G186200 Sobic002G186200 Sobic001G126800--Sobic002G186200 Sobic009G214500 Sobic009G214500 Sobic001G126800--Sobic009G214500 Sobic010G253200 Sobic010G253200 Sobic001G126800--Sobic010G253200
Octagon: transcription factors


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