Gene annotation
Transcriptome id Sobic.010G188900.1
Synonym Sb10g023900
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5Z5R6
Pfam PF13041
Panther DB PTHR24015
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G15630 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os08g31110.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a051592
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
2 Sobic.002G192900 expressed protein -
3 Sobic.010G253200 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
4 Sobic.008G132200 tetratricopeptide repeat domain containing protein, expressed -
5 Sobic.003G045000 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
6 Sobic.003G075200 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
7 Sobic.010G080900 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
8 Sobic.001G352800 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
9 Sobic.008G104000 cyclin, putative, expressed K06627: cyclin-A
10 Sobic.006G167100 - -
11 Sobic.007G111300 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
12 Sobic.008G011800 DTW domain containing protein, putative, expressed -
13 Sobic.003G423700 endonuclease, putative, expressed K08991: crossover junction endonuclease MUS81
14 Sobic.003G184300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.007G140100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
16 Sobic.002G392400 expressed protein -
17 Sobic.001G126800 WD domain, G-beta repeat domain containing protein, expressed K11790: DTL, CDT2, denticleless
18 Sobic.004G017900 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
19 Sobic.002G070300 expressed protein -
20 Sobic.002G090500 calreticulin precursor protein, putative, expressed K08057: calreticulin


Gene co-expression network
sample Sobic010G188900 Sobic010G188900 Sobic002G308000 Sobic002G308000 Sobic010G188900--Sobic002G308000 Sobic002G192900 Sobic002G192900 Sobic010G188900--Sobic002G192900 Sobic010G253200 Sobic010G253200 Sobic010G188900--Sobic010G253200 Sobic008G132200 Sobic008G132200 Sobic010G188900--Sobic008G132200 Sobic003G045000 Sobic003G045000 Sobic010G188900--Sobic003G045000 Sobic003G075200 Sobic003G075200 Sobic010G188900--Sobic003G075200 Sobic010G080900 Sobic010G080900 Sobic010G188900--Sobic010G080900 Sobic001G352800 Sobic001G352800 Sobic010G188900--Sobic001G352800 Sobic008G104000 Sobic008G104000 Sobic010G188900--Sobic008G104000 Sobic002G392400 Sobic002G392400 Sobic002G308000--Sobic002G392400 Sobic007G105700 Sobic007G105700 Sobic002G308000--Sobic007G105700 Sobic001G117900 Sobic001G117900 Sobic002G308000--Sobic001G117900 Sobic001G433600 Sobic001G433600 Sobic002G308000--Sobic001G433600 Sobic003G293400 Sobic003G293400 Sobic002G308000--Sobic003G293400 Sobic002G308000--Sobic010G253200 Sobic001G131900 Sobic001G131900 Sobic002G308000--Sobic001G131900 Sobic007G111300 Sobic007G111300 Sobic002G308000--Sobic007G111300 Sobic002G308000--Sobic002G192900 Sobic002G192900--Sobic002G308000 Sobic002G192900--Sobic010G188900 Sobic006G095000 Sobic006G095000 Sobic002G192900--Sobic006G095000 Sobic001G361200 Sobic001G361200 Sobic002G192900--Sobic001G361200 Sobic002G390800 Sobic002G390800 Sobic002G192900--Sobic002G390800 Sobic003G184300 Sobic003G184300 Sobic002G192900--Sobic003G184300 Sobic004G064600 Sobic004G064600 Sobic002G192900--Sobic004G064600 Sobic001G323400 Sobic001G323400 Sobic002G192900--Sobic001G323400 Sobic001G248400 Sobic001G248400 Sobic002G192900--Sobic001G248400 Sobic002G420100 Sobic002G420100 Sobic010G253200--Sobic002G420100 Sobic004G241300 Sobic004G241300 Sobic010G253200--Sobic004G241300 Sobic003G423700 Sobic003G423700 Sobic010G253200--Sobic003G423700 Sobic010G253200--Sobic008G104000 Sobic009G042000 Sobic009G042000 Sobic010G253200--Sobic009G042000 Sobic002G186200 Sobic002G186200 Sobic010G253200--Sobic002G186200 Sobic004G261800 Sobic004G261800 Sobic010G253200--Sobic004G261800 Sobic008G073500 Sobic008G073500 Sobic010G253200--Sobic008G073500 Sobic010G253200--Sobic002G308000 Sobic002G070300 Sobic002G070300 Sobic008G132200--Sobic002G070300 Sobic003G260600 Sobic003G260600 Sobic008G132200--Sobic003G260600 Sobic002G255400 Sobic002G255400 Sobic008G132200--Sobic002G255400 Sobic003G372200 Sobic003G372200 Sobic008G132200--Sobic003G372200 Sobic001G385000 Sobic001G385000 Sobic008G132200--Sobic001G385000 Sobic002G167100 Sobic002G167100 Sobic008G132200--Sobic002G167100 Sobic001G378800 Sobic001G378800 Sobic008G132200--Sobic001G378800 Sobic006G232800 Sobic006G232800 Sobic008G132200--Sobic006G232800 Sobic008G132200--Sobic010G253200 Sobic008G085950 Sobic008G085950 Sobic003G045000--Sobic008G085950 Sobic008G047500 Sobic008G047500 Sobic003G045000--Sobic008G047500 Sobic003G045000--Sobic010G188900 Sobic003G045000--Sobic002G308000 Sobic007G043700 Sobic007G043700 Sobic003G045000--Sobic007G043700 Sobic003G194800 Sobic003G194800 Sobic003G045000--Sobic003G194800 Sobic003G045000--Sobic007G105700 Sobic003G045000--Sobic002G390800 Sobic009G120400 Sobic009G120400 Sobic003G045000--Sobic009G120400 Sobic004G356300 Sobic004G356300 Sobic003G075200--Sobic004G356300 Sobic003G075200--Sobic001G352800 Sobic008G057900 Sobic008G057900 Sobic003G075200--Sobic008G057900 Sobic003G075200--Sobic010G188900 Sobic009G220000 Sobic009G220000 Sobic003G075200--Sobic009G220000 Sobic002G153000 Sobic002G153000 Sobic003G075200--Sobic002G153000 Sobic002G090500 Sobic002G090500 Sobic003G075200--Sobic002G090500 Sobic004G007700 Sobic004G007700 Sobic003G075200--Sobic004G007700 Sobic006G153200 Sobic006G153200 Sobic003G075200--Sobic006G153200 Sobic010G080900--Sobic002G308000 Sobic010G080900--Sobic010G188900 Sobic007G140100 Sobic007G140100 Sobic010G080900--Sobic007G140100 Sobic010G080900--Sobic008G132200 Sobic007G048700 Sobic007G048700 Sobic010G080900--Sobic007G048700 Sobic002G268700 Sobic002G268700 Sobic010G080900--Sobic002G268700 Sobic010G080900--Sobic004G007700 Sobic001G343000 Sobic001G343000 Sobic010G080900--Sobic001G343000 Sobic010G080900--Sobic004G064600 Sobic001G219800 Sobic001G219800 Sobic001G352800--Sobic001G219800 Sobic002G232400 Sobic002G232400 Sobic001G352800--Sobic002G232400 Sobic001G352800--Sobic002G255400 Sobic001G352800--Sobic003G260600 Sobic001G352800--Sobic003G075200 Sobic003G085500 Sobic003G085500 Sobic001G352800--Sobic003G085500 Sobic001G352800--Sobic002G090500 Sobic001G192700 Sobic001G192700 Sobic001G352800--Sobic001G192700 Sobic001G126800 Sobic001G126800 Sobic001G352800--Sobic001G126800 Sobic008G104000--Sobic003G423700 Sobic008G104000--Sobic004G241300 Sobic008G104000--Sobic010G253200 Sobic010G182000 Sobic010G182000 Sobic008G104000--Sobic010G182000 Sobic008G104000--Sobic002G420100 Sobic008G104000--Sobic001G126800 Sobic008G104000--Sobic001G248400 Sobic008G156600 Sobic008G156600 Sobic008G104000--Sobic008G156600 Sobic008G171900 Sobic008G171900 Sobic008G104000--Sobic008G171900
Octagon: transcription factors


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