Gene annotation
Transcriptome id Sobic.007G111300.1,Sobic.007G111300.2,Sobic.007G111300.3
Synonym Sb07g016310
Functional annotation transmembrane 9 superfamily member, putative, expressed
UniProt A0A1Z5RAB9 , A0A1Z5R9D9 , A0A1Z5RA68
Pfam PF02990
Panther DB PTHR10766 PTHR10766:SF47
NCBI CDD -
KEGG Orthology K17086; transmembrane 9 superfamily member 2/4
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G25100 : Endomembrane protein 70 protein family
RAP-DB (Rice) LOC_Os09g38530.1 : transmembrane 9 superfamily member, putative, expressed
MaizeGDB (Corn) Zm00025a054644 , Zm00025a014550 , Zm00025a047903 , Zm00025a051615
Brachypodium PNT67012 , KQK16842
Barley HORVU5Hr1G088680.6 , HORVU5Hr1G088680.1 , HORVU7Hr1G070330.8 , HORVU7Hr1G070330.9 , HORVU7Hr1G070330.4 , HORVU7Hr1G070330.5 , HORVU7Hr1G070330.6 , HORVU7Hr1G070330.7 , HORVU7Hr1G070330.1 , HORVU7Hr1G070330.2 , HORVU7Hr1G070330.3 , HORVU5Hr1G088680.13 , HORVU5Hr1G088680.15 , HORVU5Hr1G088680.16 , HORVU7Hr1G070330.10 , HORVU5Hr1G088680.9 , HORVU5Hr1G088680.8 , HORVU5Hr1G088680.7 , HORVU5Hr1G088680.3 , HORVU5Hr1G088680.11 , HORVU5Hr1G088680.10 , HORVU5Hr1G088680.12 , HORVU5Hr1G088680.14
Wheat TraesCS5A02G359800 , TraesCS7A02G294000 , TraesCS7A02G294000 , TraesCS5A02G359800 , TraesCS7A02G294000 , TraesCS5D02G369000 , TraesCS7B02G186300 , TraesCS7B02G186300 , TraesCS7B02G186300 , TraesCS7A02G294000 , TraesCS7D02G292300 , TraesCS5B02G362100 , TraesCS5B02G362100
Populus -


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cDNA sequences
Sobic.007G111300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G159700 ATKINESIN-13A/KINESIN-13A, putative, expressed K10393: KIF2_24, kinesin family member 2/24
2 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
3 Sobic.002G193500 malonyl-CoA decarboxylase, mitochondrial precursor, putative, expressed K01578: malonyl-CoA decarboxylase
4 Sobic.010G182000 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6
5 Sobic.008G104000 cyclin, putative, expressed K06627: cyclin-A
6 Sobic.003G049200 NADH-cytochrome b5 reductase, putative, expressed K00326: cytochrome-b5 reductase
7 Sobic.002G392400 expressed protein -
8 Sobic.002G070300 expressed protein -
9 Sobic.003G423700 endonuclease, putative, expressed K08991: crossover junction endonuclease MUS81
10 Sobic.008G132200 tetratricopeptide repeat domain containing protein, expressed -
11 Sobic.001G117900 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
12 Sobic.006G232800 expressed protein K17785: IMMT, FCJ1, mitofilin
13 Sobic.007G118500 galactosyltransferase family protein, putative, expressed -
14 Sobic.003G293400 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
15 Sobic.001G248400 expressed protein -
16 Sobic.007G086600 indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed K01609: indole-3-glycerol phosphate synthase
17 Sobic.010G188900 PPR repeat domain containing protein, putative, expressed -
18 Sobic.001G378800 fumarate hydratase, mitochondrial precursor, putative, expressed K01679: E4.2.1.2B, fumC, fumarate hydratase, class II
19 Sobic.007G189100 SFC, putative, expressed K12489: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
20 Sobic.002G420100 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase


Gene co-expression network
sample Sobic007G111300 Sobic007G111300 Sobic003G159700 Sobic003G159700 Sobic007G111300--Sobic003G159700 Sobic002G308000 Sobic002G308000 Sobic007G111300--Sobic002G308000 Sobic002G193500 Sobic002G193500 Sobic007G111300--Sobic002G193500 Sobic010G182000 Sobic010G182000 Sobic007G111300--Sobic010G182000 Sobic008G104000 Sobic008G104000 Sobic007G111300--Sobic008G104000 Sobic003G049200 Sobic003G049200 Sobic007G111300--Sobic003G049200 Sobic002G392400 Sobic002G392400 Sobic007G111300--Sobic002G392400 Sobic002G070300 Sobic002G070300 Sobic007G111300--Sobic002G070300 Sobic003G423700 Sobic003G423700 Sobic007G111300--Sobic003G423700 Sobic003G159700--Sobic007G111300 Sobic003G159700--Sobic002G070300 Sobic001G323400 Sobic001G323400 Sobic003G159700--Sobic001G323400 Sobic002G153000 Sobic002G153000 Sobic003G159700--Sobic002G153000 Sobic003G159700--Sobic002G308000 Sobic002G192900 Sobic002G192900 Sobic003G159700--Sobic002G192900 Sobic001G011000 Sobic001G011000 Sobic003G159700--Sobic001G011000 Sobic001G529200 Sobic001G529200 Sobic003G159700--Sobic001G529200 Sobic010G253200 Sobic010G253200 Sobic003G159700--Sobic010G253200 Sobic002G308000--Sobic002G392400 Sobic007G105700 Sobic007G105700 Sobic002G308000--Sobic007G105700 Sobic001G117900 Sobic001G117900 Sobic002G308000--Sobic001G117900 Sobic001G433600 Sobic001G433600 Sobic002G308000--Sobic001G433600 Sobic003G293400 Sobic003G293400 Sobic002G308000--Sobic003G293400 Sobic002G308000--Sobic010G253200 Sobic001G131900 Sobic001G131900 Sobic002G308000--Sobic001G131900 Sobic002G308000--Sobic007G111300 Sobic002G308000--Sobic002G192900 Sobic007G086600 Sobic007G086600 Sobic002G193500--Sobic007G086600 Sobic002G193500--Sobic007G111300 Sobic002G193500--Sobic001G117900 Sobic002G193500--Sobic002G392400 Sobic006G232800 Sobic006G232800 Sobic002G193500--Sobic006G232800 Sobic008G072500 Sobic008G072500 Sobic002G193500--Sobic008G072500 Sobic002G193500--Sobic002G308000 Sobic002G201700 Sobic002G201700 Sobic002G193500--Sobic002G201700 Sobic003G004800 Sobic003G004800 Sobic002G193500--Sobic003G004800 Sobic002G420100 Sobic002G420100 Sobic010G182000--Sobic002G420100 Sobic010G182000--Sobic003G423700 Sobic008G156600 Sobic008G156600 Sobic010G182000--Sobic008G156600 Sobic010G182000--Sobic008G104000 Sobic001G072000 Sobic001G072000 Sobic010G182000--Sobic001G072000 Sobic009G163100 Sobic009G163100 Sobic010G182000--Sobic009G163100 Sobic001G400000 Sobic001G400000 Sobic010G182000--Sobic001G400000 Sobic002G172401 Sobic002G172401 Sobic010G182000--Sobic002G172401 Sobic005G050400 Sobic005G050400 Sobic010G182000--Sobic005G050400 Sobic008G104000--Sobic003G423700 Sobic004G241300 Sobic004G241300 Sobic008G104000--Sobic004G241300 Sobic008G104000--Sobic010G253200 Sobic008G104000--Sobic010G182000 Sobic008G104000--Sobic002G420100 Sobic001G126800 Sobic001G126800 Sobic008G104000--Sobic001G126800 Sobic001G248400 Sobic001G248400 Sobic008G104000--Sobic001G248400 Sobic008G104000--Sobic008G156600 Sobic008G171900 Sobic008G171900 Sobic008G104000--Sobic008G171900 Sobic003G049200--Sobic008G072500 Sobic010G133400 Sobic010G133400 Sobic003G049200--Sobic010G133400 Sobic001G378800 Sobic001G378800 Sobic003G049200--Sobic001G378800 Sobic003G260600 Sobic003G260600 Sobic003G049200--Sobic003G260600 Sobic002G255400 Sobic002G255400 Sobic003G049200--Sobic002G255400 Sobic003G049200--Sobic007G111300 Sobic001G457000 Sobic001G457000 Sobic003G049200--Sobic001G457000 Sobic003G049200--Sobic006G232800 Sobic007G118500 Sobic007G118500 Sobic003G049200--Sobic007G118500 Sobic002G392400--Sobic007G105700 Sobic002G392400--Sobic002G308000 Sobic002G392400--Sobic001G117900 Sobic002G348400 Sobic002G348400 Sobic002G392400--Sobic002G348400 Sobic002G313100 Sobic002G313100 Sobic002G392400--Sobic002G313100 Sobic002G392400--Sobic003G293400 Sobic002G392400--Sobic001G131900 Sobic002G392400--Sobic006G232800 Sobic010G153400 Sobic010G153400 Sobic002G392400--Sobic010G153400 Sobic008G132200 Sobic008G132200 Sobic002G070300--Sobic008G132200 Sobic002G070300--Sobic007G118500 Sobic001G543400 Sobic001G543400 Sobic002G070300--Sobic001G543400 Sobic002G070300--Sobic003G260600 Sobic002G070300--Sobic001G011000 Sobic002G070300--Sobic003G159700 Sobic002G154800 Sobic002G154800 Sobic002G070300--Sobic002G154800 Sobic002G070300--Sobic001G378800 Sobic002G070300--Sobic002G153000 Sobic003G423700--Sobic001G126800 Sobic003G423700--Sobic004G241300 Sobic003G423700--Sobic008G104000 Sobic003G423700--Sobic008G156600 Sobic003G423700--Sobic002G420100 Sobic003G423700--Sobic009G163100 Sobic003G423700--Sobic010G182000 Sobic003G423700--Sobic008G171900 Sobic003G423700--Sobic010G253200
Octagon: transcription factors


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