Gene annotation
Transcriptome id Sobic.001G378800.2,Sobic.001G378800.3
Synonym Sb01g035950, FUM1
Functional annotation fumarate hydratase, mitochondrial precursor, putative, expressed
UniProt A0A1B6QND7
Pfam PF10415 PF00206
Panther DB PTHR11444 PTHR11444:SF1
NCBI CDD -
KEGG Orthology K01679; E4.2.1.2B, fumC, fumarate hydratase, class II
Gene Ontology GO:0016829; lyase activity GO:0006099tricarboxylic acid cycle


Orthologs (automatic annotation)
TAIR AT5G50950 : FUMARASE 2
RAP-DB (Rice) LOC_Os03g21950.1 : fumarate hydratase, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a002373 , Zm00025a046235 , Zm00025a029239 , Zm00025a046307 , Zm00025a016177
Brachypodium KQK21775 , PNT77454
Barley HORVU4Hr1G049590.3 , HORVU4Hr1G049590.1 , HORVU4Hr1G049590.2 , HORVU4Hr1G049590.4 , HORVU4Hr1G049590.5
Wheat TraesCS4A02G137100 , TraesCS4A02G137100 , TraesCS4D02G170200 , TraesCS4B02G167200
Populus -


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cDNA sequences
Sobic.001G378800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G232800 expressed protein K17785: IMMT, FCJ1, mitofilin
2 Sobic.003G394500 GPI transamidase component PIG-S-related, putative, expressed K05291: GPI-anchor transamidase subunit S
3 Sobic.001G047600 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
4 Sobic.004G077300 guanine nucleotide exchange family protein, putative, expressed K18442: ARFGEF, brefeldin A-inhibited guanine nucleotide-exchange protein
5 Sobic.001G356200 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
6 Sobic.003G372200 AGC_AGC_other_PDK1_Pk61C.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed K06276: 3-phosphoinositide dependent protein kinase-1
7 Sobic.001G424800 myosin heavy chain-related, putative, expressed -
8 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
9 Sobic.004G350700 kelch repeat protein, putative, expressed -
10 Sobic.003G049200 NADH-cytochrome b5 reductase, putative, expressed K00326: cytochrome-b5 reductase
11 Sobic.007G118500 galactosyltransferase family protein, putative, expressed -
12 Sobic.010G133400 pantothenate kinase 4, putative, expressed -
13 Sobic.009G054600 -(PubMedID : 26976818)@dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
14 Sobic.001G385000 nucleoside-triphosphatase, putative, expressed K14641: apyrase
15 Sobic.003G201500 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
16 Sobic.008G152700 expressed protein K07541: GPI mannosyltransferase 1 subunit X
17 Sobic.001G149000 FAR1 family protein, expressed -
18 Sobic.010G065200 expressed protein -
19 Sobic.006G012700 expressed protein -
20 Sobic.001G486900 exostosin family protein, putative, expressed -


Gene co-expression network
sample Sobic001G378800 Sobic001G378800 Sobic006G232800 Sobic006G232800 Sobic001G378800--Sobic006G232800 Sobic003G394500 Sobic003G394500 Sobic001G378800--Sobic003G394500 Sobic001G047600 Sobic001G047600 Sobic001G378800--Sobic001G047600 Sobic004G077300 Sobic004G077300 Sobic001G378800--Sobic004G077300 Sobic001G356200 Sobic001G356200 Sobic001G378800--Sobic001G356200 Sobic003G372200 Sobic003G372200 Sobic001G378800--Sobic003G372200 Sobic001G424800 Sobic001G424800 Sobic001G378800--Sobic001G424800 Sobic003G260600 Sobic003G260600 Sobic001G378800--Sobic003G260600 Sobic004G350700 Sobic004G350700 Sobic001G378800--Sobic004G350700 Sobic006G232800--Sobic001G378800 Sobic001G385000 Sobic001G385000 Sobic006G232800--Sobic001G385000 Sobic006G232800--Sobic003G394500 Sobic001G149000 Sobic001G149000 Sobic006G232800--Sobic001G149000 Sobic010G086300 Sobic010G086300 Sobic006G232800--Sobic010G086300 Sobic001G280500 Sobic001G280500 Sobic006G232800--Sobic001G280500 Sobic002G313100 Sobic002G313100 Sobic006G232800--Sobic002G313100 Sobic002G392400 Sobic002G392400 Sobic006G232800--Sobic002G392400 Sobic006G265800 Sobic006G265800 Sobic006G232800--Sobic006G265800 Sobic003G117800 Sobic003G117800 Sobic003G394500--Sobic003G117800 Sobic003G394500--Sobic001G385000 Sobic003G394500--Sobic004G350700 Sobic003G394500--Sobic001G378800 Sobic007G118500 Sobic007G118500 Sobic003G394500--Sobic007G118500 Sobic003G190200 Sobic003G190200 Sobic003G394500--Sobic003G190200 Sobic003G394500--Sobic006G232800 Sobic007G030100 Sobic007G030100 Sobic003G394500--Sobic007G030100 Sobic003G394500--Sobic001G424800 Sobic004G093600 Sobic004G093600 Sobic001G047600--Sobic004G093600 Sobic001G047600--Sobic001G378800 Sobic003G058500 Sobic003G058500 Sobic001G047600--Sobic003G058500 Sobic003G034900 Sobic003G034900 Sobic001G047600--Sobic003G034900 Sobic006G012700 Sobic006G012700 Sobic001G047600--Sobic006G012700 SobicK043400 SobicK043400 Sobic001G047600--SobicK043400 Sobic003G156400 Sobic003G156400 Sobic001G047600--Sobic003G156400 Sobic001G465400 Sobic001G465400 Sobic001G047600--Sobic001G465400 Sobic001G047600--Sobic007G118500 Sobic004G077300--Sobic001G149000 Sobic003G385300 Sobic003G385300 Sobic004G077300--Sobic003G385300 Sobic008G152700 Sobic008G152700 Sobic004G077300--Sobic008G152700 Sobic004G176200 Sobic004G176200 Sobic004G077300--Sobic004G176200 Sobic004G077300--Sobic001G378800 Sobic006G080700 Sobic006G080700 Sobic004G077300--Sobic006G080700 Sobic001G384200 Sobic001G384200 Sobic004G077300--Sobic001G384200 Sobic004G077300--Sobic004G350700 Sobic002G180800 Sobic002G180800 Sobic004G077300--Sobic002G180800 Sobic004G113600 Sobic004G113600 Sobic001G356200--Sobic004G113600 Sobic001G400000 Sobic001G400000 Sobic001G356200--Sobic001G400000 Sobic001G356200--Sobic003G385300 Sobic007G039200 Sobic007G039200 Sobic001G356200--Sobic007G039200 Sobic001G356200--Sobic001G424800 Sobic004G107100 Sobic004G107100 Sobic001G356200--Sobic004G107100 Sobic003G089100 Sobic003G089100 Sobic001G356200--Sobic003G089100 Sobic001G356200--Sobic003G117800 Sobic006G134500 Sobic006G134500 Sobic001G356200--Sobic006G134500 Sobic003G372200--Sobic001G378800 Sobic004G284800 Sobic004G284800 Sobic003G372200--Sobic004G284800 Sobic003G201500 Sobic003G201500 Sobic003G372200--Sobic003G201500 Sobic003G372200--Sobic003G260600 Sobic003G372200--Sobic003G089100 Sobic002G420600 Sobic002G420600 Sobic003G372200--Sobic002G420600 Sobic002G167100 Sobic002G167100 Sobic003G372200--Sobic002G167100 Sobic003G372200--Sobic006G232800 Sobic002G362500 Sobic002G362500 Sobic003G372200--Sobic002G362500 Sobic001G424800--Sobic003G117800 Sobic001G424800--Sobic003G058500 Sobic001G424800--Sobic004G350700 Sobic001G424800--Sobic001G356200 Sobic001G424800--Sobic001G149000 Sobic001G424800--Sobic001G280500 Sobic001G424800--Sobic003G394500 Sobic001G424800--Sobic003G385300 Sobic001G424800--Sobic001G378800 Sobic002G255400 Sobic002G255400 Sobic003G260600--Sobic002G255400 Sobic003G260600--Sobic003G201500 Sobic003G260600--Sobic003G089100 Sobic008G132200 Sobic008G132200 Sobic003G260600--Sobic008G132200 Sobic003G260600--Sobic001G378800 Sobic003G260600--Sobic003G372200 Sobic003G260600--Sobic002G420600 Sobic008G072500 Sobic008G072500 Sobic003G260600--Sobic008G072500 Sobic007G014700 Sobic007G014700 Sobic003G260600--Sobic007G014700 Sobic008G055500 Sobic008G055500 Sobic004G350700--Sobic008G055500 Sobic004G350700--Sobic003G394500 Sobic004G350700--Sobic003G385300 Sobic004G350700--Sobic001G424800 Sobic006G060000 Sobic006G060000 Sobic004G350700--Sobic006G060000 Sobic004G350700--Sobic001G149000 Sobic007G172700 Sobic007G172700 Sobic004G350700--Sobic007G172700 Sobic001G114200 Sobic001G114200 Sobic004G350700--Sobic001G114200 Sobic004G350700--Sobic003G117800
Octagon: transcription factors


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