Gene annotation
Transcriptome id Sobic.006G012700.1,Sobic.006G012700.2
Synonym Sb06g001250
Functional annotation expressed protein
UniProt A0A1Z5RCC3 , C5YBU1
Pfam PF08695
Panther DB PTHR35114 PTHR35114:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G20390 : -
RAP-DB (Rice) LOC_Os04g04030.1 : expressed protein
MaizeGDB (Corn) Zm00025a012264
Brachypodium -
Barley HORVU2Hr1G001830.3 , HORVU2Hr1G001830.4 , HORVU2Hr1G001830.5 , HORVU2Hr1G001830.2 , HORVU2Hr1G001830.1 , HORVU5Hr1G095560.2 , HORVU5Hr1G095560.1
Wheat TraesCS2D02G012700
Populus -


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cDNA sequences
Sobic.006G012700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G465400 dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed K00658: DLST, 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase)
2 Sobic.001G378800 fumarate hydratase, mitochondrial precursor, putative, expressed K01679: E4.2.1.2B, fumC, fumarate hydratase, class II
3 Sobic.004G093600 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
4 Sobic.001G047600 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
5 Sobic.003G156400 OsPDIL2-2 protein disulfide isomerase PDIL2-2, expressed K09584: PDIA6, protein disulfide-isomerase A6
6 Sobic.001G378200 tetratricopeptide repeat domain containing protein, expressed -
7 Sobic.003G034900 mitochondrial-processing peptidase subunit alpha, mitochondrial precursor, putative, expressed K01412: PMPCA, mitochondrial-processing peptidase subunit alpha
8 Sobic.002G395500 ATP12 ATPase, putative, expressed K07556: ATPeAF2, ATPAF2, ATP synthase mitochondrial F1 complex assembly factor 2
9 Sobic.001G389200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
10 Sobic.006G060000 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
11 Sobic.003G129900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
12 Sobic.004G263500 DnaK family protein, putative, expressed K09486: hypoxia up-regulated 1
13 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
14 Sobic.001G387200 expressed protein -
15 Sobic.008G168200 expressed protein -
16 Sobic.007G118500 galactosyltransferase family protein, putative, expressed -
17 Sobic.001G457000 ATP synthase gamma chain, putative, expressed K02136: ATPeF1G, ATP5C1, F-type H+-transporting ATPase subunit gamma
18 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
19 Sobic.003G190600 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
20 Sobic.004G078700 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1


Gene co-expression network
sample Sobic006G012700 Sobic006G012700 Sobic001G465400 Sobic001G465400 Sobic006G012700--Sobic001G465400 Sobic001G378800 Sobic001G378800 Sobic006G012700--Sobic001G378800 Sobic004G093600 Sobic004G093600 Sobic006G012700--Sobic004G093600 Sobic001G047600 Sobic001G047600 Sobic006G012700--Sobic001G047600 Sobic003G156400 Sobic003G156400 Sobic006G012700--Sobic003G156400 Sobic001G378200 Sobic001G378200 Sobic006G012700--Sobic001G378200 Sobic003G034900 Sobic003G034900 Sobic006G012700--Sobic003G034900 Sobic002G395500 Sobic002G395500 Sobic006G012700--Sobic002G395500 Sobic001G389200 Sobic001G389200 Sobic006G012700--Sobic001G389200 Sobic001G465400--Sobic003G034900 Sobic001G465400--Sobic006G012700 Sobic001G115700 Sobic001G115700 Sobic001G465400--Sobic001G115700 Sobic001G465400--Sobic001G378200 Sobic004G078700 Sobic004G078700 Sobic001G465400--Sobic004G078700 Sobic004G000100 Sobic004G000100 Sobic001G465400--Sobic004G000100 Sobic001G465400--Sobic001G047600 Sobic001G008100 Sobic001G008100 Sobic001G465400--Sobic001G008100 Sobic004G347600 Sobic004G347600 Sobic001G465400--Sobic004G347600 Sobic006G232800 Sobic006G232800 Sobic001G378800--Sobic006G232800 Sobic003G394500 Sobic003G394500 Sobic001G378800--Sobic003G394500 Sobic001G378800--Sobic001G047600 Sobic004G077300 Sobic004G077300 Sobic001G378800--Sobic004G077300 Sobic001G356200 Sobic001G356200 Sobic001G378800--Sobic001G356200 Sobic003G372200 Sobic003G372200 Sobic001G378800--Sobic003G372200 Sobic001G424800 Sobic001G424800 Sobic001G378800--Sobic001G424800 Sobic003G260600 Sobic003G260600 Sobic001G378800--Sobic003G260600 Sobic004G350700 Sobic004G350700 Sobic001G378800--Sobic004G350700 Sobic003G129900 Sobic003G129900 Sobic004G093600--Sobic003G129900 Sobic001G387200 Sobic001G387200 Sobic004G093600--Sobic001G387200 Sobic004G093600--Sobic001G047600 Sobic004G093600--Sobic003G034900 Sobic001G457000 Sobic001G457000 Sobic004G093600--Sobic001G457000 Sobic006G120900 Sobic006G120900 Sobic004G093600--Sobic006G120900 Sobic004G093600--Sobic001G378800 Sobic004G093600--Sobic006G012700 Sobic004G093600--Sobic003G260600 Sobic001G047600--Sobic004G093600 Sobic001G047600--Sobic001G378800 Sobic003G058500 Sobic003G058500 Sobic001G047600--Sobic003G058500 Sobic001G047600--Sobic003G034900 Sobic001G047600--Sobic006G012700 SobicK043400 SobicK043400 Sobic001G047600--SobicK043400 Sobic001G047600--Sobic003G156400 Sobic001G047600--Sobic001G465400 Sobic007G118500 Sobic007G118500 Sobic001G047600--Sobic007G118500 Sobic003G156400--Sobic001G047600 Sobic003G156400--Sobic006G012700 Sobic001G205100 Sobic001G205100 Sobic003G156400--Sobic001G205100 Sobic008G097900 Sobic008G097900 Sobic003G156400--Sobic008G097900 Sobic008G171400 Sobic008G171400 Sobic003G156400--Sobic008G171400 Sobic008G168200 Sobic008G168200 Sobic003G156400--Sobic008G168200 Sobic001G253300 Sobic001G253300 Sobic003G156400--Sobic001G253300 Sobic003G156400--Sobic001G389200 Sobic003G365100 Sobic003G365100 Sobic003G156400--Sobic003G365100 Sobic001G378200--Sobic001G465400 Sobic001G112400 Sobic001G112400 Sobic001G378200--Sobic001G112400 Sobic001G378200--Sobic006G012700 Sobic001G378200--Sobic004G078700 Sobic004G039400 Sobic004G039400 Sobic001G378200--Sobic004G039400 Sobic001G443200 Sobic001G443200 Sobic001G378200--Sobic001G443200 Sobic001G378200--Sobic001G008100 Sobic002G262200 Sobic002G262200 Sobic001G378200--Sobic002G262200 Sobic005G207400 Sobic005G207400 Sobic001G378200--Sobic005G207400 Sobic001G458800 Sobic001G458800 Sobic003G034900--Sobic001G458800 Sobic003G034900--Sobic001G465400 Sobic003G034900--Sobic004G093600 Sobic003G034900--Sobic001G115700 Sobic003G034900--Sobic001G047600 Sobic007G171500 Sobic007G171500 Sobic003G034900--Sobic007G171500 Sobic009G224400 Sobic009G224400 Sobic003G034900--Sobic009G224400 Sobic003G034900--Sobic004G347600 Sobic003G034900--Sobic001G457000 Sobic002G395500--Sobic001G389200 Sobic002G395500--Sobic008G168200 Sobic002G395500--Sobic003G394500 Sobic007G028500 Sobic007G028500 Sobic002G395500--Sobic007G028500 Sobic003G190600 Sobic003G190600 Sobic002G395500--Sobic003G190600 Sobic002G395500--Sobic006G012700 Sobic002G395500--Sobic001G047600 Sobic004G254800 Sobic004G254800 Sobic002G395500--Sobic004G254800 Sobic006G060000 Sobic006G060000 Sobic002G395500--Sobic006G060000 Sobic001G389200--Sobic006G060000 Sobic001G389200--Sobic008G168200 Sobic001G389200--Sobic002G395500 Sobic002G355800 Sobic002G355800 Sobic001G389200--Sobic002G355800 Sobic001G389200--Sobic004G254800 Sobic001G389200--Sobic004G078700 Sobic007G172700 Sobic007G172700 Sobic001G389200--Sobic007G172700 Sobic010G169900 Sobic010G169900 Sobic001G389200--Sobic010G169900 Sobic009G122500 Sobic009G122500 Sobic001G389200--Sobic009G122500
Octagon: transcription factors


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