Gene annotation
Transcriptome id Sobic.004G078700.1
Synonym Sb04g006490
Functional annotation tubulin binding cofactor C, putative, expressed
UniProt C5XXG3
Pfam PF07986
Panther DB PTHR16052 PTHR16052:SF1
NCBI CDD KOG4416; Uncharacterized conserved protein
KEGG Orthology K16810; TBCC domain-containing protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G57890 : Tubulin binding cofactor C domain-containing protein
RAP-DB (Rice) LOC_Os02g10130.1 : tubulin binding cofactor C, putative, expressed
MaizeGDB (Corn) Zm00025a037252 , Zm00025a042118 , Zm00025a036070 , Zm00025a019653 , Zm00025a034665
Brachypodium KQK17664 , KQJ93841
Barley HORVU6Hr1G033580.3 , HORVU6Hr1G033580.2 , HORVU6Hr1G033580.1 , HORVU6Hr1G033580.7 , HORVU6Hr1G033580.6 , HORVU6Hr1G033580.5 , HORVU6Hr1G033580.4 , HORVU7Hr1G094510.6 , HORVU7Hr1G094510.4 , HORVU7Hr1G094510.5 , HORVU7Hr1G094510.2 , HORVU7Hr1G094510.3 , HORVU7Hr1G094510.1
Wheat TraesCS6B02G193300 , TraesCS6B02G193300 , TraesCS7A02G403300 , TraesCS6D02G154500 , TraesCS6D02G154500 , TraesCS6D02G154500 , TraesCS7A02G403300 , TraesCS7A02G403300 , TraesCS7A02G403300 , TraesCS7D02G396800 , TraesCS7D02G396800 , TraesCS7D02G396800 , TraesCS6A02G165900 , TraesCS6A02G165900 , TraesCS6A02G165900 , TraesCS6A02G165900 , TraesCS7B02G302800 , TraesCS7B02G302800 , TraesCS7B02G302800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G389200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
2 Sobic.001G465400 dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed K00658: DLST, 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase)
3 Sobic.004G100200 protein phosphatase 1 regulatory subunit SDS22, putative, expressed K17550: PPP1R7, protein phosphatase 1 regulatory subunit 7
4 Sobic.010G223400 expressed protein -
5 Sobic.002G355800 calcium-binding protein, putative, expressed K08272: CAB39, calcium binding protein 39
6 Sobic.004G254800 heat shock protein DnaJ, putative, expressed K19371: DnaJ homolog subfamily C member 25
7 Sobic.007G118500 galactosyltransferase family protein, putative, expressed -
8 Sobic.001G378200 tetratricopeptide repeat domain containing protein, expressed -
9 Sobic.003G316200 transmembrane protein 49, putative, expressed -
10 Sobic.001G193100 expressed protein -
11 Sobic.001G049400 OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
12 Sobic.001G161700 vesicle-fusing ATPase, putative, expressed K06027: NSF, vesicle-fusing ATPase
13 Sobic.003G346400 vacuolar ATP synthase 98 kDa subunit, putative, expressed K02154: ATPeV0A, V-type H+-transporting ATPase subunit a
14 Sobic.006G060000 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
15 Sobic.006G012700 expressed protein -
16 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
17 Sobic.006G128100 lipase, putative, expressed -
18 Sobic.007G172700 ECT5, putative, expressed -
19 Sobic.004G060300 DNA binding protein, putative, expressed -
20 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B


Gene co-expression network
sample Sobic004G078700 Sobic004G078700 Sobic001G389200 Sobic001G389200 Sobic004G078700--Sobic001G389200 Sobic001G465400 Sobic001G465400 Sobic004G078700--Sobic001G465400 Sobic004G100200 Sobic004G100200 Sobic004G078700--Sobic004G100200 Sobic010G223400 Sobic010G223400 Sobic004G078700--Sobic010G223400 Sobic002G355800 Sobic002G355800 Sobic004G078700--Sobic002G355800 Sobic004G254800 Sobic004G254800 Sobic004G078700--Sobic004G254800 Sobic007G118500 Sobic007G118500 Sobic004G078700--Sobic007G118500 Sobic001G378200 Sobic001G378200 Sobic004G078700--Sobic001G378200 Sobic003G316200 Sobic003G316200 Sobic004G078700--Sobic003G316200 Sobic006G060000 Sobic006G060000 Sobic001G389200--Sobic006G060000 Sobic008G168200 Sobic008G168200 Sobic001G389200--Sobic008G168200 Sobic002G395500 Sobic002G395500 Sobic001G389200--Sobic002G395500 Sobic001G389200--Sobic002G355800 Sobic001G389200--Sobic004G254800 Sobic001G389200--Sobic004G078700 Sobic007G172700 Sobic007G172700 Sobic001G389200--Sobic007G172700 Sobic010G169900 Sobic010G169900 Sobic001G389200--Sobic010G169900 Sobic009G122500 Sobic009G122500 Sobic001G389200--Sobic009G122500 Sobic003G034900 Sobic003G034900 Sobic001G465400--Sobic003G034900 Sobic006G012700 Sobic006G012700 Sobic001G465400--Sobic006G012700 Sobic001G115700 Sobic001G115700 Sobic001G465400--Sobic001G115700 Sobic001G465400--Sobic001G378200 Sobic001G465400--Sobic004G078700 Sobic004G000100 Sobic004G000100 Sobic001G465400--Sobic004G000100 Sobic001G047600 Sobic001G047600 Sobic001G465400--Sobic001G047600 Sobic001G008100 Sobic001G008100 Sobic001G465400--Sobic001G008100 Sobic004G347600 Sobic004G347600 Sobic001G465400--Sobic004G347600 Sobic004G100200--Sobic004G078700 Sobic007G005500 Sobic007G005500 Sobic004G100200--Sobic007G005500 Sobic006G260500 Sobic006G260500 Sobic004G100200--Sobic006G260500 Sobic003G209200 Sobic003G209200 Sobic004G100200--Sobic003G209200 Sobic009G077600 Sobic009G077600 Sobic004G100200--Sobic009G077600 Sobic004G100200--Sobic010G169900 Sobic003G346400 Sobic003G346400 Sobic004G100200--Sobic003G346400 Sobic004G207900 Sobic004G207900 Sobic004G100200--Sobic004G207900 Sobic004G241900 Sobic004G241900 Sobic004G100200--Sobic004G241900 Sobic010G223400--Sobic009G122500 Sobic003G394200 Sobic003G394200 Sobic010G223400--Sobic003G394200 Sobic005G059500 Sobic005G059500 Sobic010G223400--Sobic005G059500 Sobic001G193100 Sobic001G193100 Sobic010G223400--Sobic001G193100 Sobic003G182300 Sobic003G182300 Sobic010G223400--Sobic003G182300 Sobic005G114500 Sobic005G114500 Sobic010G223400--Sobic005G114500 Sobic001G474400 Sobic001G474400 Sobic010G223400--Sobic001G474400 Sobic010G223400--Sobic004G078700 Sobic001G012900 Sobic001G012900 Sobic010G223400--Sobic001G012900 Sobic002G355800--Sobic010G169900 Sobic002G355800--Sobic007G172700 Sobic006G128100 Sobic006G128100 Sobic002G355800--Sobic006G128100 Sobic010G213500 Sobic010G213500 Sobic002G355800--Sobic010G213500 Sobic002G355800--Sobic001G389200 Sobic001G475300 Sobic001G475300 Sobic002G355800--Sobic001G475300 Sobic003G058500 Sobic003G058500 Sobic002G355800--Sobic003G058500 Sobic009G162100 Sobic009G162100 Sobic002G355800--Sobic009G162100 Sobic005G177700 Sobic005G177700 Sobic002G355800--Sobic005G177700 Sobic004G254800--Sobic003G346400 Sobic004G254800--Sobic001G389200 Sobic004G254800--Sobic004G078700 Sobic004G254800--Sobic003G394200 Sobic001G161700 Sobic001G161700 Sobic004G254800--Sobic001G161700 Sobic004G254800--Sobic009G122500 Sobic004G060300 Sobic004G060300 Sobic004G254800--Sobic004G060300 Sobic004G254800--Sobic002G395500 Sobic003G394500 Sobic003G394500 Sobic004G254800--Sobic003G394500 Sobic007G118500--Sobic003G394500 Sobic007G118500--Sobic004G060300 Sobic002G070300 Sobic002G070300 Sobic007G118500--Sobic002G070300 Sobic010G133400 Sobic010G133400 Sobic007G118500--Sobic010G133400 Sobic001G378800 Sobic001G378800 Sobic007G118500--Sobic001G378800 Sobic006G232800 Sobic006G232800 Sobic007G118500--Sobic006G232800 Sobic001G455000 Sobic001G455000 Sobic007G118500--Sobic001G455000 Sobic001G356100 Sobic001G356100 Sobic007G118500--Sobic001G356100 Sobic008G171400 Sobic008G171400 Sobic007G118500--Sobic008G171400 Sobic001G378200--Sobic001G465400 Sobic001G112400 Sobic001G112400 Sobic001G378200--Sobic001G112400 Sobic001G378200--Sobic006G012700 Sobic001G378200--Sobic004G078700 Sobic004G039400 Sobic004G039400 Sobic001G378200--Sobic004G039400 Sobic001G443200 Sobic001G443200 Sobic001G378200--Sobic001G443200 Sobic001G378200--Sobic001G008100 Sobic002G262200 Sobic002G262200 Sobic001G378200--Sobic002G262200 Sobic005G207400 Sobic005G207400 Sobic001G378200--Sobic005G207400 Sobic001G253300 Sobic001G253300 Sobic003G316200--Sobic001G253300 Sobic003G316200--Sobic005G177700 Sobic003G365100 Sobic003G365100 Sobic003G316200--Sobic003G365100 Sobic001G188400 Sobic001G188400 Sobic003G316200--Sobic001G188400 Sobic006G250800 Sobic006G250800 Sobic003G316200--Sobic006G250800 Sobic003G316200--Sobic004G078700 Sobic002G079000 Sobic002G079000 Sobic003G316200--Sobic002G079000 Sobic003G316200--Sobic002G355800 Sobic003G114400 Sobic003G114400 Sobic003G316200--Sobic003G114400
Octagon: transcription factors


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