Gene annotation
Transcriptome id Sobic.002G355800.1
Synonym Sb02g037730
Functional annotation calcium-binding protein, putative, expressed
UniProt A0A1W0W722
Pfam PF08569
Panther DB PTHR10182 PTHR10182:SF12
NCBI CDD KOG1566; Conserved protein Mo25
KEGG Orthology K08272; CAB39, calcium binding protein 39
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G47540 : Mo25 family protein
RAP-DB (Rice) LOC_Os07g39630.1 : calcium-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a048543 , Zm00025a015038
Brachypodium KQK15494
Barley HORVU2Hr1G036030.1
Wheat TraesCS2A02G191000 , TraesCS2A02G191000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G355800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
2 Sobic.007G172700 ECT5, putative, expressed -
3 Sobic.006G128100 lipase, putative, expressed -
4 Sobic.010G213500 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
5 Sobic.001G389200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
6 Sobic.001G475300 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
7 Sobic.003G058500 expressed protein -
8 Sobic.009G162100 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
9 Sobic.005G177700 transmembrane protein 49, putative, expressed -
10 Sobic.004G078700 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
11 Sobic.002G079000 expressed protein -
12 Sobic.006G060000 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
13 Sobic.003G316200 transmembrane protein 49, putative, expressed -
14 Sobic.001G253300 phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
15 Sobic.001G188400 tobamovirus multiplication protein, putative, expressed -
16 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
17 Sobic.003G202600 single myb histone, putative, expressed K09422: transcription factor MYB, plant
18 Sobic.007G087000 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
19 Sobic.001G114200 transmembrane anterior posterior transformation 1, putative, expressed -
20 Sobic.009G128500 CBS domain containing protein, expressed K16302: metal transporter CNNM


Gene co-expression network
sample Sobic002G355800 Sobic002G355800 Sobic010G169900 Sobic010G169900 Sobic002G355800--Sobic010G169900 Sobic007G172700 Sobic007G172700 Sobic002G355800--Sobic007G172700 Sobic006G128100 Sobic006G128100 Sobic002G355800--Sobic006G128100 Sobic010G213500 Sobic010G213500 Sobic002G355800--Sobic010G213500 Sobic001G389200 Sobic001G389200 Sobic002G355800--Sobic001G389200 Sobic001G475300 Sobic001G475300 Sobic002G355800--Sobic001G475300 Sobic003G058500 Sobic003G058500 Sobic002G355800--Sobic003G058500 Sobic009G162100 Sobic009G162100 Sobic002G355800--Sobic009G162100 Sobic005G177700 Sobic005G177700 Sobic002G355800--Sobic005G177700 Sobic001G308400 Sobic001G308400 Sobic010G169900--Sobic001G308400 Sobic002G079000 Sobic002G079000 Sobic010G169900--Sobic002G079000 Sobic009G128500 Sobic009G128500 Sobic010G169900--Sobic009G128500 Sobic010G169900--Sobic002G355800 Sobic002G227500 Sobic002G227500 Sobic010G169900--Sobic002G227500 Sobic010G169900--Sobic006G128100 Sobic009G194000 Sobic009G194000 Sobic010G169900--Sobic009G194000 Sobic010G169900--Sobic001G389200 Sobic001G490900 Sobic001G490900 Sobic010G169900--Sobic001G490900 Sobic006G060000 Sobic006G060000 Sobic007G172700--Sobic006G060000 Sobic004G350700 Sobic004G350700 Sobic007G172700--Sobic004G350700 Sobic008G152700 Sobic008G152700 Sobic007G172700--Sobic008G152700 Sobic003G190200 Sobic003G190200 Sobic007G172700--Sobic003G190200 Sobic003G394500 Sobic003G394500 Sobic007G172700--Sobic003G394500 Sobic007G172700--Sobic003G058500 Sobic007G172700--Sobic002G355800 Sobic001G424800 Sobic001G424800 Sobic007G172700--Sobic001G424800 Sobic007G030100 Sobic007G030100 Sobic007G172700--Sobic007G030100 Sobic003G394200 Sobic003G394200 Sobic006G128100--Sobic003G394200 Sobic006G128100--Sobic001G308400 Sobic006G128100--Sobic002G355800 Sobic006G128100--Sobic010G169900 Sobic006G128100--Sobic002G079000 Sobic006G128100--Sobic010G213500 Sobic003G189600 Sobic003G189600 Sobic006G128100--Sobic003G189600 Sobic003G346400 Sobic003G346400 Sobic006G128100--Sobic003G346400 Sobic006G210700 Sobic006G210700 Sobic006G128100--Sobic006G210700 Sobic010G213500--Sobic002G079000 Sobic010G213500--Sobic002G355800 Sobic010G213500--Sobic006G128100 Sobic002G306100 Sobic002G306100 Sobic010G213500--Sobic002G306100 Sobic010G213500--Sobic010G169900 Sobic010G213500--Sobic001G490900 Sobic010G213500--Sobic007G172700 Sobic003G398400 Sobic003G398400 Sobic010G213500--Sobic003G398400 Sobic007G125000 Sobic007G125000 Sobic010G213500--Sobic007G125000 Sobic001G389200--Sobic006G060000 Sobic008G168200 Sobic008G168200 Sobic001G389200--Sobic008G168200 Sobic002G395500 Sobic002G395500 Sobic001G389200--Sobic002G395500 Sobic001G389200--Sobic002G355800 Sobic004G254800 Sobic004G254800 Sobic001G389200--Sobic004G254800 Sobic004G078700 Sobic004G078700 Sobic001G389200--Sobic004G078700 Sobic001G389200--Sobic007G172700 Sobic001G389200--Sobic010G169900 Sobic009G122500 Sobic009G122500 Sobic001G389200--Sobic009G122500 Sobic003G250400 Sobic003G250400 Sobic001G475300--Sobic003G250400 Sobic010G181600 Sobic010G181600 Sobic001G475300--Sobic010G181600 Sobic001G141400 Sobic001G141400 Sobic001G475300--Sobic001G141400 Sobic003G117800 Sobic003G117800 Sobic001G475300--Sobic003G117800 Sobic001G475300--Sobic007G172700 Sobic001G475300--Sobic002G355800 Sobic001G475300--Sobic003G058500 Sobic001G475300--Sobic008G152700 Sobic004G302800 Sobic004G302800 Sobic001G475300--Sobic004G302800 Sobic003G058500--Sobic001G424800 Sobic003G058500--Sobic010G181600 Sobic003G058500--Sobic007G172700 Sobic001G047600 Sobic001G047600 Sobic003G058500--Sobic001G047600 Sobic003G058500--Sobic004G350700 Sobic003G058500--Sobic002G355800 Sobic001G378800 Sobic001G378800 Sobic003G058500--Sobic001G378800 Sobic003G058500--Sobic008G152700 Sobic003G058500--Sobic003G117800 Sobic009G162100--Sobic007G172700 Sobic009G162100--Sobic006G060000 Sobic009G162100--Sobic002G355800 Sobic009G162100--Sobic003G058500 Sobic009G162100--Sobic001G047600 Sobic001G253300 Sobic001G253300 Sobic009G162100--Sobic001G253300 Sobic009G162100--Sobic001G475300 Sobic003G181700 Sobic003G181700 Sobic009G162100--Sobic003G181700 Sobic002G200000 Sobic002G200000 Sobic009G162100--Sobic002G200000 Sobic003G316200 Sobic003G316200 Sobic005G177700--Sobic003G316200 Sobic007G056100 Sobic007G056100 Sobic005G177700--Sobic007G056100 Sobic005G177700--Sobic002G355800 Sobic006G077300 Sobic006G077300 Sobic005G177700--Sobic006G077300 Sobic009G041700 Sobic009G041700 Sobic005G177700--Sobic009G041700 Sobic005G177700--Sobic001G253300 Sobic004G228800 Sobic004G228800 Sobic005G177700--Sobic004G228800 Sobic003G365100 Sobic003G365100 Sobic005G177700--Sobic003G365100 Sobic002G268800 Sobic002G268800 Sobic005G177700--Sobic002G268800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.