Gene annotation
Transcriptome id Sobic.003G202600.1
Synonym Sb03g026470, TRB1, ATTRB1
Functional annotation single myb histone, putative, expressed
UniProt C5XPI1
Pfam PF00249 PF00538
Panther DB PTHR21717 PTHR21717:SF31
NCBI CDD -
KEGG Orthology K09422; transcription factor MYB, plant
Gene Ontology GO:0006334; nucleosome assembly GO:0005634nucleus GO:0003677DNA binding GO:0000786nucleosome


Orthologs (automatic annotation)
TAIR AT1G49950 : telomere repeat binding factor 1
RAP-DB (Rice) LOC_Os01g40670.1 : single myb histone, putative, expressed
MaizeGDB (Corn) Zm00025a028536 , Zm00025a038428
Brachypodium KQK08508
Barley HORVU3Hr1G051190.8 , HORVU5Hr1G009880.4 , HORVU5Hr1G009880.6 , HORVU5Hr1G009880.1 , HORVU5Hr1G009880.2 , HORVU5Hr1G009880.3 , HORVU3Hr1G051190.1 , HORVU3Hr1G051190.3 , HORVU3Hr1G051190.2 , HORVU3Hr1G051190.5 , HORVU3Hr1G051190.4 , HORVU3Hr1G051190.7 , HORVU3Hr1G051190.6
Wheat TraesCS3A02G211500 , TraesCS3A02G211500 , TraesCS5B02G043100 , TraesCS3B02G241900 , TraesCS5D02G048400 , TraesCS3D02G214200 , TraesCS3D02G214200 , TraesCS3D02G214200 , TraesCS5A02G041500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G095000 CorA-like magnesium transporter protein, putative, expressed K16075: MRS2, magnesium transporter
2 Sobic.002G079000 expressed protein -
3 Sobic.002G355800 calcium-binding protein, putative, expressed K08272: CAB39, calcium binding protein 39
4 Sobic.007G087000 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
5 Sobic.001G237600 transcription factor Dp, putative, expressed K04683: transcription factor Dp-1
6 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
7 Sobic.001G389200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
8 Sobic.006G060000 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
9 Sobic.003G302200 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
10 Sobic.002G200000 zinc finger, C3HC4 type, putative, expressed -
11 Sobic.010G213500 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
12 Sobic.001G188400 tobamovirus multiplication protein, putative, expressed -
13 Sobic.007G076400 expressed protein -
14 Sobic.003G182300 zinc finger family protein, putative, expressed K16284: E3 ubiquitin-protein ligase SIS3
15 Sobic.004G344700 expressed protein -
16 Sobic.004G028100 expressed protein -
17 Sobic.006G039400 cation efflux family protein, putative, expressed K14696: SLC30A9, solute carrier family 30 (zinc transporter), member 9
18 Sobic.009G156100 - -
19 Sobic.007G105900 IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed -
20 Sobic.001G358500 GA20734-PA, putative, expressed -


Gene co-expression network
sample Sobic003G202600 Sobic003G202600 Sobic001G095000 Sobic001G095000 Sobic003G202600--Sobic001G095000 Sobic002G079000 Sobic002G079000 Sobic003G202600--Sobic002G079000 Sobic002G355800 Sobic002G355800 Sobic003G202600--Sobic002G355800 Sobic007G087000 Sobic007G087000 Sobic003G202600--Sobic007G087000 Sobic001G237600 Sobic001G237600 Sobic003G202600--Sobic001G237600 Sobic010G169900 Sobic010G169900 Sobic003G202600--Sobic010G169900 Sobic001G389200 Sobic001G389200 Sobic003G202600--Sobic001G389200 Sobic006G060000 Sobic006G060000 Sobic003G202600--Sobic006G060000 Sobic003G302200 Sobic003G302200 Sobic003G202600--Sobic003G302200 Sobic001G095000--Sobic003G202600 Sobic001G095000--Sobic007G087000 Sobic001G095000--Sobic001G237600 Sobic001G095000--Sobic002G079000 Sobic007G032000 Sobic007G032000 Sobic001G095000--Sobic007G032000 Sobic001G095000--Sobic003G302200 Sobic007G076400 Sobic007G076400 Sobic001G095000--Sobic007G076400 Sobic001G188400 Sobic001G188400 Sobic001G095000--Sobic001G188400 Sobic008G116700 Sobic008G116700 Sobic001G095000--Sobic008G116700 Sobic002G079000--Sobic007G087000 Sobic002G079000--Sobic010G169900 Sobic010G213500 Sobic010G213500 Sobic002G079000--Sobic010G213500 Sobic004G198600 Sobic004G198600 Sobic002G079000--Sobic004G198600 Sobic006G128100 Sobic006G128100 Sobic002G079000--Sobic006G128100 Sobic006G250800 Sobic006G250800 Sobic002G079000--Sobic006G250800 Sobic007G172700 Sobic007G172700 Sobic002G079000--Sobic007G172700 Sobic002G079000--Sobic001G237600 Sobic001G490900 Sobic001G490900 Sobic002G079000--Sobic001G490900 Sobic002G355800--Sobic010G169900 Sobic002G355800--Sobic007G172700 Sobic002G355800--Sobic006G128100 Sobic002G355800--Sobic010G213500 Sobic002G355800--Sobic001G389200 Sobic001G475300 Sobic001G475300 Sobic002G355800--Sobic001G475300 Sobic003G058500 Sobic003G058500 Sobic002G355800--Sobic003G058500 Sobic009G162100 Sobic009G162100 Sobic002G355800--Sobic009G162100 Sobic005G177700 Sobic005G177700 Sobic002G355800--Sobic005G177700 Sobic007G087000--Sobic002G079000 Sobic007G087000--Sobic007G076400 Sobic002G306100 Sobic002G306100 Sobic007G087000--Sobic002G306100 Sobic007G087000--Sobic008G116700 Sobic007G087000--Sobic006G250800 Sobic001G014200 Sobic001G014200 Sobic007G087000--Sobic001G014200 Sobic007G087000--Sobic001G237600 Sobic007G087000--Sobic007G172700 Sobic009G107300 Sobic009G107300 Sobic007G087000--Sobic009G107300 Sobic003G363700 Sobic003G363700 Sobic001G237600--Sobic003G363700 Sobic004G320700 Sobic004G320700 Sobic001G237600--Sobic004G320700 Sobic001G237600--Sobic002G079000 Sobic001G237600--Sobic007G087000 Sobic006G039400 Sobic006G039400 Sobic001G237600--Sobic006G039400 Sobic001G237600--Sobic003G202600 Sobic010G244900 Sobic010G244900 Sobic001G237600--Sobic010G244900 Sobic001G237600--Sobic001G095000 Sobic002G292900 Sobic002G292900 Sobic001G237600--Sobic002G292900 Sobic001G308400 Sobic001G308400 Sobic010G169900--Sobic001G308400 Sobic010G169900--Sobic002G079000 Sobic009G128500 Sobic009G128500 Sobic010G169900--Sobic009G128500 Sobic010G169900--Sobic002G355800 Sobic002G227500 Sobic002G227500 Sobic010G169900--Sobic002G227500 Sobic010G169900--Sobic006G128100 Sobic009G194000 Sobic009G194000 Sobic010G169900--Sobic009G194000 Sobic010G169900--Sobic001G389200 Sobic010G169900--Sobic001G490900 Sobic001G389200--Sobic006G060000 Sobic008G168200 Sobic008G168200 Sobic001G389200--Sobic008G168200 Sobic002G395500 Sobic002G395500 Sobic001G389200--Sobic002G395500 Sobic001G389200--Sobic002G355800 Sobic004G254800 Sobic004G254800 Sobic001G389200--Sobic004G254800 Sobic004G078700 Sobic004G078700 Sobic001G389200--Sobic004G078700 Sobic001G389200--Sobic007G172700 Sobic001G389200--Sobic010G169900 Sobic009G122500 Sobic009G122500 Sobic001G389200--Sobic009G122500 Sobic008G055500 Sobic008G055500 Sobic006G060000--Sobic008G055500 Sobic004G350700 Sobic004G350700 Sobic006G060000--Sobic004G350700 Sobic006G060000--Sobic007G172700 Sobic001G114200 Sobic001G114200 Sobic006G060000--Sobic001G114200 Sobic003G394500 Sobic003G394500 Sobic006G060000--Sobic003G394500 Sobic006G060000--Sobic001G389200 Sobic004G263500 Sobic004G263500 Sobic006G060000--Sobic004G263500 Sobic003G117800 Sobic003G117800 Sobic006G060000--Sobic003G117800 Sobic006G060000--Sobic001G490900 Sobic003G193500 Sobic003G193500 Sobic003G302200--Sobic003G193500 Sobic003G302200--Sobic002G079000 Sobic001G049400 Sobic001G049400 Sobic003G302200--Sobic001G049400 Sobic003G302200--Sobic010G169900 Sobic003G302200--Sobic002G355800 Sobic003G302200--Sobic003G202600 Sobic003G302200--Sobic009G128500 Sobic004G100200 Sobic004G100200 Sobic003G302200--Sobic004G100200 Sobic006G210700 Sobic006G210700 Sobic003G302200--Sobic006G210700
Octagon: transcription factors


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