Gene annotation
Transcriptome id Sobic.001G389200.1
Synonym Sb01g036890
Functional annotation endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed
UniProt C5X1T1
Pfam PF13850 PF07970
Panther DB PTHR10984 PTHR10984:SF35
NCBI CDD KOG2667; COPII vesicle protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G36050 : Endoplasmic reticulum vesicle transporter protein
RAP-DB (Rice) LOC_Os03g20520.1 : endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed
MaizeGDB (Corn) Zm00025a002246
Brachypodium PNT77512 , PNT77511 , KQK21918 , KQK21917
Barley HORVU4Hr1G052080.1
Wheat TraesCS4B02G177000 , TraesCS4D02G178700 , TraesCS4D02G178700 , TraesCS4D02G178700 , TraesCS4A02G127700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G389200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G060000 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
2 Sobic.008G168200 expressed protein -
3 Sobic.002G395500 ATP12 ATPase, putative, expressed K07556: ATPeAF2, ATPAF2, ATP synthase mitochondrial F1 complex assembly factor 2
4 Sobic.002G355800 calcium-binding protein, putative, expressed K08272: CAB39, calcium binding protein 39
5 Sobic.004G254800 heat shock protein DnaJ, putative, expressed K19371: DnaJ homolog subfamily C member 25
6 Sobic.004G078700 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
7 Sobic.007G172700 ECT5, putative, expressed -
8 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
9 Sobic.009G122500 expressed protein -
10 Sobic.008G171400 phosphonate metabolism protein-related, putative, expressed -
11 Sobic.003G394500 GPI transamidase component PIG-S-related, putative, expressed K05291: GPI-anchor transamidase subunit S
12 Sobic.004G060300 DNA binding protein, putative, expressed -
13 Sobic.004G350700 kelch repeat protein, putative, expressed -
14 Sobic.001G205100 expressed protein -
15 Sobic.007G118500 galactosyltransferase family protein, putative, expressed -
16 Sobic.003G190600 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
17 Sobic.006G012700 expressed protein -
18 Sobic.009G194000 Alg9-like mannosyltransferase protein, putative, expressed K05286: GPI mannosyltransferase 3
19 Sobic.003G409900 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
20 Sobic.010G223400 expressed protein -


Gene co-expression network
sample Sobic001G389200 Sobic001G389200 Sobic006G060000 Sobic006G060000 Sobic001G389200--Sobic006G060000 Sobic008G168200 Sobic008G168200 Sobic001G389200--Sobic008G168200 Sobic002G395500 Sobic002G395500 Sobic001G389200--Sobic002G395500 Sobic002G355800 Sobic002G355800 Sobic001G389200--Sobic002G355800 Sobic004G254800 Sobic004G254800 Sobic001G389200--Sobic004G254800 Sobic004G078700 Sobic004G078700 Sobic001G389200--Sobic004G078700 Sobic007G172700 Sobic007G172700 Sobic001G389200--Sobic007G172700 Sobic010G169900 Sobic010G169900 Sobic001G389200--Sobic010G169900 Sobic009G122500 Sobic009G122500 Sobic001G389200--Sobic009G122500 Sobic008G055500 Sobic008G055500 Sobic006G060000--Sobic008G055500 Sobic004G350700 Sobic004G350700 Sobic006G060000--Sobic004G350700 Sobic006G060000--Sobic007G172700 Sobic001G114200 Sobic001G114200 Sobic006G060000--Sobic001G114200 Sobic003G394500 Sobic003G394500 Sobic006G060000--Sobic003G394500 Sobic006G060000--Sobic001G389200 Sobic004G263500 Sobic004G263500 Sobic006G060000--Sobic004G263500 Sobic003G117800 Sobic003G117800 Sobic006G060000--Sobic003G117800 Sobic001G490900 Sobic001G490900 Sobic006G060000--Sobic001G490900 Sobic008G168200--Sobic001G389200 Sobic001G205100 Sobic001G205100 Sobic008G168200--Sobic001G205100 Sobic008G168200--Sobic002G395500 Sobic008G168200--Sobic006G060000 Sobic003G156400 Sobic003G156400 Sobic008G168200--Sobic003G156400 Sobic008G168200--Sobic003G394500 Sobic006G012700 Sobic006G012700 Sobic008G168200--Sobic006G012700 Sobic008G171400 Sobic008G171400 Sobic008G168200--Sobic008G171400 Sobic003G409900 Sobic003G409900 Sobic008G168200--Sobic003G409900 Sobic002G395500--Sobic001G389200 Sobic002G395500--Sobic008G168200 Sobic002G395500--Sobic003G394500 Sobic007G028500 Sobic007G028500 Sobic002G395500--Sobic007G028500 Sobic003G190600 Sobic003G190600 Sobic002G395500--Sobic003G190600 Sobic002G395500--Sobic006G012700 Sobic001G047600 Sobic001G047600 Sobic002G395500--Sobic001G047600 Sobic002G395500--Sobic004G254800 Sobic002G395500--Sobic006G060000 Sobic002G355800--Sobic010G169900 Sobic002G355800--Sobic007G172700 Sobic006G128100 Sobic006G128100 Sobic002G355800--Sobic006G128100 Sobic010G213500 Sobic010G213500 Sobic002G355800--Sobic010G213500 Sobic002G355800--Sobic001G389200 Sobic001G475300 Sobic001G475300 Sobic002G355800--Sobic001G475300 Sobic003G058500 Sobic003G058500 Sobic002G355800--Sobic003G058500 Sobic009G162100 Sobic009G162100 Sobic002G355800--Sobic009G162100 Sobic005G177700 Sobic005G177700 Sobic002G355800--Sobic005G177700 Sobic003G346400 Sobic003G346400 Sobic004G254800--Sobic003G346400 Sobic004G254800--Sobic001G389200 Sobic004G254800--Sobic004G078700 Sobic003G394200 Sobic003G394200 Sobic004G254800--Sobic003G394200 Sobic001G161700 Sobic001G161700 Sobic004G254800--Sobic001G161700 Sobic004G254800--Sobic009G122500 Sobic004G060300 Sobic004G060300 Sobic004G254800--Sobic004G060300 Sobic004G254800--Sobic002G395500 Sobic004G254800--Sobic003G394500 Sobic004G078700--Sobic001G389200 Sobic001G465400 Sobic001G465400 Sobic004G078700--Sobic001G465400 Sobic004G100200 Sobic004G100200 Sobic004G078700--Sobic004G100200 Sobic010G223400 Sobic010G223400 Sobic004G078700--Sobic010G223400 Sobic004G078700--Sobic002G355800 Sobic004G078700--Sobic004G254800 Sobic007G118500 Sobic007G118500 Sobic004G078700--Sobic007G118500 Sobic001G378200 Sobic001G378200 Sobic004G078700--Sobic001G378200 Sobic003G316200 Sobic003G316200 Sobic004G078700--Sobic003G316200 Sobic007G172700--Sobic006G060000 Sobic007G172700--Sobic004G350700 Sobic008G152700 Sobic008G152700 Sobic007G172700--Sobic008G152700 Sobic003G190200 Sobic003G190200 Sobic007G172700--Sobic003G190200 Sobic007G172700--Sobic003G394500 Sobic007G172700--Sobic003G058500 Sobic007G172700--Sobic002G355800 Sobic001G424800 Sobic001G424800 Sobic007G172700--Sobic001G424800 Sobic007G030100 Sobic007G030100 Sobic007G172700--Sobic007G030100 Sobic001G308400 Sobic001G308400 Sobic010G169900--Sobic001G308400 Sobic002G079000 Sobic002G079000 Sobic010G169900--Sobic002G079000 Sobic009G128500 Sobic009G128500 Sobic010G169900--Sobic009G128500 Sobic010G169900--Sobic002G355800 Sobic002G227500 Sobic002G227500 Sobic010G169900--Sobic002G227500 Sobic010G169900--Sobic006G128100 Sobic009G194000 Sobic009G194000 Sobic010G169900--Sobic009G194000 Sobic010G169900--Sobic001G389200 Sobic010G169900--Sobic001G490900 Sobic001G335000 Sobic001G335000 Sobic009G122500--Sobic001G335000 Sobic009G122500--Sobic004G060300 Sobic001G156900 Sobic001G156900 Sobic009G122500--Sobic001G156900 Sobic004G122900 Sobic004G122900 Sobic009G122500--Sobic004G122900 Sobic009G122500--Sobic010G223400 Sobic009G122500--Sobic001G308400 Sobic009G122500--Sobic003G394200 Sobic009G122500--Sobic001G389200 Sobic001G118000 Sobic001G118000 Sobic009G122500--Sobic001G118000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.