Gene annotation
Transcriptome id Sobic.003G190600.1
Synonym ZIG1, SGR4, Sb03g025490, ATVTI11, VTI11, ZIG, VTI1A, ATVTI1A
Functional annotation vesicle transport v-SNARE protein, putative, expressed
UniProt C5XNN2
Pfam PF12352 PF05008
Panther DB PTHR21230 PTHR21230:SF31
NCBI CDD KOG1666; V-SNARE
KEGG Orthology K08493; vesicle transport through interaction with t-SNAREs 1
Gene Ontology GO:0016020; membrane GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT5G39510 : Vesicle transport v-SNARE family protein
RAP-DB (Rice) LOC_Os01g37980.1 : vesicle transport v-SNARE protein, putative, expressed
MaizeGDB (Corn) Zm00025a038930 , Zm00025a038368 , Zm00025a027842
Brachypodium KQK04261 , KQK04260 , KQK08350 , KQK08351
Barley HORVU3Hr1G066580.1 , HORVU3Hr1G066580.2 , HORVU3Hr1G066580.3
Wheat TraesCS3A02G252300 , TraesCS3B02G234600 , TraesCS3A02G207400 , TraesCS3D02G208300 , TraesCS3B02G283800 , TraesCS3D02G252800 , TraesCS3D02G207900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G395500 ATP12 ATPase, putative, expressed K07556: ATPeAF2, ATPAF2, ATP synthase mitochondrial F1 complex assembly factor 2
2 Sobic.001G389200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
3 Sobic.002G023100 heat shock protein DnaJ, putative, expressed -
4 Sobic.001G378200 tetratricopeptide repeat domain containing protein, expressed -
5 Sobic.001G485300 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
6 Sobic.007G118500 galactosyltransferase family protein, putative, expressed -
7 Sobic.006G012700 expressed protein -
8 Sobic.004G060300 DNA binding protein, putative, expressed -
9 Sobic.001G047600 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
10 Sobic.002G276800 ER lumen protein retaining receptor, putative, expressed -
11 Sobic.006G060000 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
12 Sobic.003G394500 GPI transamidase component PIG-S-related, putative, expressed K05291: GPI-anchor transamidase subunit S
13 Sobic.003G167000 protein phosphotase protein, putative, expressed -
14 Sobic.004G141400 START domain containing protein, putative, expressed -
15 Sobic.003G058500 expressed protein -
16 Sobic.002G355800 calcium-binding protein, putative, expressed K08272: CAB39, calcium binding protein 39
17 Sobic.001G335000 erlin-2 precursor, putative, expressed -
18 Sobic.009G122500 expressed protein -
19 Sobic.007G030100 galactosyltransferase family protein, putative, expressed -
20 Sobic.008G168200 expressed protein -


Gene co-expression network
sample Sobic003G190600 Sobic003G190600 Sobic002G395500 Sobic002G395500 Sobic003G190600--Sobic002G395500 Sobic001G389200 Sobic001G389200 Sobic003G190600--Sobic001G389200 Sobic002G023100 Sobic002G023100 Sobic003G190600--Sobic002G023100 Sobic001G378200 Sobic001G378200 Sobic003G190600--Sobic001G378200 Sobic001G485300 Sobic001G485300 Sobic003G190600--Sobic001G485300 Sobic007G118500 Sobic007G118500 Sobic003G190600--Sobic007G118500 Sobic006G012700 Sobic006G012700 Sobic003G190600--Sobic006G012700 Sobic004G060300 Sobic004G060300 Sobic003G190600--Sobic004G060300 Sobic001G047600 Sobic001G047600 Sobic003G190600--Sobic001G047600 Sobic002G395500--Sobic001G389200 Sobic008G168200 Sobic008G168200 Sobic002G395500--Sobic008G168200 Sobic003G394500 Sobic003G394500 Sobic002G395500--Sobic003G394500 Sobic007G028500 Sobic007G028500 Sobic002G395500--Sobic007G028500 Sobic002G395500--Sobic003G190600 Sobic002G395500--Sobic006G012700 Sobic002G395500--Sobic001G047600 Sobic004G254800 Sobic004G254800 Sobic002G395500--Sobic004G254800 Sobic006G060000 Sobic006G060000 Sobic002G395500--Sobic006G060000 Sobic001G389200--Sobic006G060000 Sobic001G389200--Sobic008G168200 Sobic001G389200--Sobic002G395500 Sobic002G355800 Sobic002G355800 Sobic001G389200--Sobic002G355800 Sobic001G389200--Sobic004G254800 Sobic004G078700 Sobic004G078700 Sobic001G389200--Sobic004G078700 Sobic007G172700 Sobic007G172700 Sobic001G389200--Sobic007G172700 Sobic010G169900 Sobic010G169900 Sobic001G389200--Sobic010G169900 Sobic009G122500 Sobic009G122500 Sobic001G389200--Sobic009G122500 Sobic002G023100--Sobic003G190600 Sobic003G160500 Sobic003G160500 Sobic002G023100--Sobic003G160500 Sobic003G305900 Sobic003G305900 Sobic002G023100--Sobic003G305900 Sobic007G158900 Sobic007G158900 Sobic002G023100--Sobic007G158900 Sobic001G061200 Sobic001G061200 Sobic002G023100--Sobic001G061200 Sobic009G050500 Sobic009G050500 Sobic002G023100--Sobic009G050500 Sobic003G058500 Sobic003G058500 Sobic002G023100--Sobic003G058500 Sobic010G181600 Sobic010G181600 Sobic002G023100--Sobic010G181600 Sobic004G141400 Sobic004G141400 Sobic002G023100--Sobic004G141400 Sobic001G465400 Sobic001G465400 Sobic001G378200--Sobic001G465400 Sobic001G112400 Sobic001G112400 Sobic001G378200--Sobic001G112400 Sobic001G378200--Sobic006G012700 Sobic001G378200--Sobic004G078700 Sobic004G039400 Sobic004G039400 Sobic001G378200--Sobic004G039400 Sobic001G443200 Sobic001G443200 Sobic001G378200--Sobic001G443200 Sobic001G008100 Sobic001G008100 Sobic001G378200--Sobic001G008100 Sobic002G262200 Sobic002G262200 Sobic001G378200--Sobic002G262200 Sobic005G207400 Sobic005G207400 Sobic001G378200--Sobic005G207400 Sobic002G348400 Sobic002G348400 Sobic001G485300--Sobic002G348400 Sobic003G085500 Sobic003G085500 Sobic001G485300--Sobic003G085500 Sobic002G276800 Sobic002G276800 Sobic001G485300--Sobic002G276800 Sobic006G041800 Sobic006G041800 Sobic001G485300--Sobic006G041800 Sobic001G485300--Sobic003G190600 Sobic002G392400 Sobic002G392400 Sobic001G485300--Sobic002G392400 Sobic004G054700 Sobic004G054700 Sobic001G485300--Sobic004G054700 Sobic001G347700 Sobic001G347700 Sobic001G485300--Sobic001G347700 Sobic001G352800 Sobic001G352800 Sobic001G485300--Sobic001G352800 Sobic007G118500--Sobic003G394500 Sobic007G118500--Sobic004G060300 Sobic002G070300 Sobic002G070300 Sobic007G118500--Sobic002G070300 Sobic010G133400 Sobic010G133400 Sobic007G118500--Sobic010G133400 Sobic001G378800 Sobic001G378800 Sobic007G118500--Sobic001G378800 Sobic006G232800 Sobic006G232800 Sobic007G118500--Sobic006G232800 Sobic001G455000 Sobic001G455000 Sobic007G118500--Sobic001G455000 Sobic001G356100 Sobic001G356100 Sobic007G118500--Sobic001G356100 Sobic008G171400 Sobic008G171400 Sobic007G118500--Sobic008G171400 Sobic006G012700--Sobic001G465400 Sobic006G012700--Sobic001G378800 Sobic004G093600 Sobic004G093600 Sobic006G012700--Sobic004G093600 Sobic006G012700--Sobic001G047600 Sobic003G156400 Sobic003G156400 Sobic006G012700--Sobic003G156400 Sobic006G012700--Sobic001G378200 Sobic003G034900 Sobic003G034900 Sobic006G012700--Sobic003G034900 Sobic006G012700--Sobic002G395500 Sobic006G012700--Sobic001G389200 Sobic004G060300--Sobic007G118500 Sobic004G060300--Sobic009G122500 Sobic004G060300--Sobic003G394500 Sobic001G335000 Sobic001G335000 Sobic004G060300--Sobic001G335000 Sobic003G346400 Sobic003G346400 Sobic004G060300--Sobic003G346400 Sobic007G030100 Sobic007G030100 Sobic004G060300--Sobic007G030100 Sobic004G060300--Sobic001G389200 Sobic004G084500 Sobic004G084500 Sobic004G060300--Sobic004G084500 Sobic001G012900 Sobic001G012900 Sobic004G060300--Sobic001G012900 Sobic001G047600--Sobic004G093600 Sobic001G047600--Sobic001G378800 Sobic001G047600--Sobic003G058500 Sobic001G047600--Sobic003G034900 Sobic001G047600--Sobic006G012700 SobicK043400 SobicK043400 Sobic001G047600--SobicK043400 Sobic001G047600--Sobic003G156400 Sobic001G047600--Sobic001G465400 Sobic001G047600--Sobic007G118500
Octagon: transcription factors


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