Gene annotation
Transcriptome id Sobic.001G378200.1
Synonym Sb01g035880
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt C5X0Q8
Pfam PF13414
Panther DB PTHR22904 PTHR22904:SF169
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G16760 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g22140.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a002382
Brachypodium KQK21766
Barley HORVU4Hr1G046380.2 , HORVU4Hr1G046380.1
Wheat TraesCS4D02G169600 , TraesCS4B02G167600 , TraesCS4A02G140100
Populus -


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cDNA sequences
Sobic.001G378200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G465400 dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed K00658: DLST, 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase)
2 Sobic.001G112400 cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed K02258: COX11, cytochrome c oxidase assembly protein subunit 11
3 Sobic.006G012700 expressed protein -
4 Sobic.004G078700 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
5 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
6 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
7 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
8 Sobic.002G262200 expressed protein -
9 Sobic.005G207400 - -
10 Sobic.003G190600 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
11 Sobic.001G332300 expressed protein -
12 Sobic.005G184200 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
13 Sobic.003G034900 mitochondrial-processing peptidase subunit alpha, mitochondrial precursor, putative, expressed K01412: PMPCA, mitochondrial-processing peptidase subunit alpha
14 Sobic.004G000100 uridine/cytidine kinase-like 1, putative, expressed K00876: udk, uridine kinase
15 Sobic.001G047600 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
16 Sobic.002G401700 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
17 Sobic.004G347600 vacuolar ATP synthase subunit H, putative, expressed K02144: V-type H+-transporting ATPase subunit H
18 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
19 Sobic.002G276800 ER lumen protein retaining receptor, putative, expressed -
20 Sobic.002G422400 adenylate cyclase family protein, expressed -


Gene co-expression network
sample Sobic001G378200 Sobic001G378200 Sobic001G465400 Sobic001G465400 Sobic001G378200--Sobic001G465400 Sobic001G112400 Sobic001G112400 Sobic001G378200--Sobic001G112400 Sobic006G012700 Sobic006G012700 Sobic001G378200--Sobic006G012700 Sobic004G078700 Sobic004G078700 Sobic001G378200--Sobic004G078700 Sobic004G039400 Sobic004G039400 Sobic001G378200--Sobic004G039400 Sobic001G443200 Sobic001G443200 Sobic001G378200--Sobic001G443200 Sobic001G008100 Sobic001G008100 Sobic001G378200--Sobic001G008100 Sobic002G262200 Sobic002G262200 Sobic001G378200--Sobic002G262200 Sobic005G207400 Sobic005G207400 Sobic001G378200--Sobic005G207400 Sobic003G034900 Sobic003G034900 Sobic001G465400--Sobic003G034900 Sobic001G465400--Sobic006G012700 Sobic001G115700 Sobic001G115700 Sobic001G465400--Sobic001G115700 Sobic001G465400--Sobic001G378200 Sobic001G465400--Sobic004G078700 Sobic004G000100 Sobic004G000100 Sobic001G465400--Sobic004G000100 Sobic001G047600 Sobic001G047600 Sobic001G465400--Sobic001G047600 Sobic001G465400--Sobic001G008100 Sobic004G347600 Sobic004G347600 Sobic001G465400--Sobic004G347600 Sobic001G112400--Sobic002G262200 Sobic001G112400--Sobic001G443200 Sobic005G184200 Sobic005G184200 Sobic001G112400--Sobic005G184200 Sobic001G112400--Sobic001G378200 Sobic001G112400--Sobic004G347600 Sobic001G112400--Sobic004G039400 Sobic004G344800 Sobic004G344800 Sobic001G112400--Sobic004G344800 Sobic002G396700 Sobic002G396700 Sobic001G112400--Sobic002G396700 Sobic001G112400--Sobic001G465400 Sobic006G012700--Sobic001G465400 Sobic001G378800 Sobic001G378800 Sobic006G012700--Sobic001G378800 Sobic004G093600 Sobic004G093600 Sobic006G012700--Sobic004G093600 Sobic006G012700--Sobic001G047600 Sobic003G156400 Sobic003G156400 Sobic006G012700--Sobic003G156400 Sobic006G012700--Sobic001G378200 Sobic006G012700--Sobic003G034900 Sobic002G395500 Sobic002G395500 Sobic006G012700--Sobic002G395500 Sobic001G389200 Sobic001G389200 Sobic006G012700--Sobic001G389200 Sobic004G078700--Sobic001G389200 Sobic004G078700--Sobic001G465400 Sobic004G100200 Sobic004G100200 Sobic004G078700--Sobic004G100200 Sobic010G223400 Sobic010G223400 Sobic004G078700--Sobic010G223400 Sobic002G355800 Sobic002G355800 Sobic004G078700--Sobic002G355800 Sobic004G254800 Sobic004G254800 Sobic004G078700--Sobic004G254800 Sobic007G118500 Sobic007G118500 Sobic004G078700--Sobic007G118500 Sobic004G078700--Sobic001G378200 Sobic003G316200 Sobic003G316200 Sobic004G078700--Sobic003G316200 Sobic004G039400--Sobic001G008100 Sobic001G073600 Sobic001G073600 Sobic004G039400--Sobic001G073600 Sobic010G040900 Sobic010G040900 Sobic004G039400--Sobic010G040900 Sobic004G039400--Sobic001G443200 Sobic004G039400--Sobic002G262200 Sobic009G191400 Sobic009G191400 Sobic004G039400--Sobic009G191400 Sobic004G039400--Sobic004G344800 Sobic001G387200 Sobic001G387200 Sobic004G039400--Sobic001G387200 Sobic002G079700 Sobic002G079700 Sobic004G039400--Sobic002G079700 Sobic008G102600 Sobic008G102600 Sobic001G443200--Sobic008G102600 Sobic001G443200--Sobic004G000100 Sobic001G443200--Sobic004G039400 Sobic001G443200--Sobic001G112400 Sobic001G443200--Sobic004G344800 Sobic002G141700 Sobic002G141700 Sobic001G443200--Sobic002G141700 Sobic001G443200--Sobic010G040900 Sobic001G443200--Sobic001G073600 Sobic001G443200--Sobic002G262200 Sobic001G008100--Sobic004G039400 Sobic006G041800 Sobic006G041800 Sobic001G008100--Sobic006G041800 Sobic001G008100--Sobic001G465400 Sobic001G008100--Sobic010G040900 Sobic001G387800 Sobic001G387800 Sobic001G008100--Sobic001G387800 Sobic003G276100 Sobic003G276100 Sobic001G008100--Sobic003G276100 Sobic001G008100--Sobic002G079700 Sobic001G008100--Sobic009G191400 Sobic002G276800 Sobic002G276800 Sobic001G008100--Sobic002G276800 Sobic004G159000 Sobic004G159000 Sobic002G262200--Sobic004G159000 Sobic009G224400 Sobic009G224400 Sobic002G262200--Sobic009G224400 Sobic002G395000 Sobic002G395000 Sobic002G262200--Sobic002G395000 Sobic003G135600 Sobic003G135600 Sobic002G262200--Sobic003G135600 Sobic002G262200--Sobic004G344800 Sobic002G262200--Sobic001G073600 Sobic002G262200--Sobic001G112400 Sobic007G013900 Sobic007G013900 Sobic002G262200--Sobic007G013900 Sobic002G262200--Sobic009G191400 Sobic005G207400--Sobic001G378200 Sobic004G025300 Sobic004G025300 Sobic005G207400--Sobic004G025300 Sobic005G207400--Sobic004G078700 Sobic001G261432 Sobic001G261432 Sobic005G207400--Sobic001G261432 Sobic001G332300 Sobic001G332300 Sobic005G207400--Sobic001G332300 Sobic007G077532 Sobic007G077532 Sobic005G207400--Sobic007G077532 Sobic001G312500 Sobic001G312500 Sobic005G207400--Sobic001G312500 Sobic001G127000 Sobic001G127000 Sobic005G207400--Sobic001G127000 Sobic003G202600 Sobic003G202600 Sobic005G207400--Sobic003G202600
Octagon: transcription factors


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