Gene annotation
Transcriptome id Sobic.001G443200.1
Synonym Sb01g041650
Functional annotation transmembrane 9 superfamily member, putative, expressed
UniProt C5WRM4
Pfam PF02990
Panther DB PTHR10766 PTHR10766:SF58
NCBI CDD -
KEGG Orthology K17087; transmembrane 9 superfamily member 3
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT2G01970 : Endomembrane protein 70 protein family
RAP-DB (Rice) LOC_Os03g13380.1 : transmembrane 9 superfamily member, putative, expressed
MaizeGDB (Corn) Zm00025a001481 , Zm00025a052945
Brachypodium KQJ95285 , KQK22675 , PNT77781
Barley HORVU4Hr1G064710.4 , HORVU4Hr1G064710.5 , HORVU4Hr1G064710.1 , HORVU4Hr1G064710.2 , HORVU4Hr1G064710.3
Wheat TraesCS4A02G074900 , TraesCS4D02G232300
Populus PNS23473 , PNS23472 , PNS23475 , PNS23474 , PNT40064 , PNT40060 , PNT40061 , PNT40062 , PNT40063 , PNS22727 , PNS22726 , PNS22724 , PNS22725


JBrowse

Open New Page


cDNA sequences
Sobic.001G443200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G102600 expressed protein -
2 Sobic.004G000100 uridine/cytidine kinase-like 1, putative, expressed K00876: udk, uridine kinase
3 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
4 Sobic.001G112400 cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed K02258: COX11, cytochrome c oxidase assembly protein subunit 11
5 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
6 Sobic.002G141700 unc-50, putative, expressed -
7 Sobic.010G040900 trafficking protein particle complex subunit 4, putative, expressed -
8 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
9 Sobic.002G262200 expressed protein -
10 Sobic.001G077900 SSA2 - 2S albumin seed storage family protein precursor, putative, expressed -
11 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
12 Sobic.004G347600 vacuolar ATP synthase subunit H, putative, expressed K02144: V-type H+-transporting ATPase subunit H
13 Sobic.008G110500 UDP-N-acetylglucosamine transferase subunit ALG13, putative, expressed K07432: beta-1,4-N-acetylglucosaminyltransferase
14 Sobic.007G117800 cytochrome b561, putative, expressed K08360: cytochrome b-561
15 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
16 Sobic.001G378200 tetratricopeptide repeat domain containing protein, expressed -
17 Sobic.003G261800 expressed protein -
18 Sobic.005G184200 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
19 Sobic.001G458800 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed K17732: PMPCB, mitochondrial-processing peptidase subunit beta
20 Sobic.003G276100 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A


Gene co-expression network
sample Sobic001G443200 Sobic001G443200 Sobic008G102600 Sobic008G102600 Sobic001G443200--Sobic008G102600 Sobic004G000100 Sobic004G000100 Sobic001G443200--Sobic004G000100 Sobic004G039400 Sobic004G039400 Sobic001G443200--Sobic004G039400 Sobic001G112400 Sobic001G112400 Sobic001G443200--Sobic001G112400 Sobic004G344800 Sobic004G344800 Sobic001G443200--Sobic004G344800 Sobic002G141700 Sobic002G141700 Sobic001G443200--Sobic002G141700 Sobic010G040900 Sobic010G040900 Sobic001G443200--Sobic010G040900 Sobic001G073600 Sobic001G073600 Sobic001G443200--Sobic001G073600 Sobic002G262200 Sobic002G262200 Sobic001G443200--Sobic002G262200 Sobic008G102600--Sobic001G443200 Sobic009G112900 Sobic009G112900 Sobic008G102600--Sobic009G112900 Sobic003G196200 Sobic003G196200 Sobic008G102600--Sobic003G196200 Sobic008G102600--Sobic004G000100 Sobic004G045300 Sobic004G045300 Sobic008G102600--Sobic004G045300 Sobic008G110500 Sobic008G110500 Sobic008G102600--Sobic008G110500 Sobic001G387800 Sobic001G387800 Sobic008G102600--Sobic001G387800 Sobic008G102600--Sobic001G112400 Sobic008G102600--Sobic004G039400 Sobic007G173700 Sobic007G173700 Sobic004G000100--Sobic007G173700 Sobic004G000100--Sobic001G443200 Sobic001G465400 Sobic001G465400 Sobic004G000100--Sobic001G465400 Sobic001G161700 Sobic001G161700 Sobic004G000100--Sobic001G161700 Sobic004G000100--Sobic008G102600 Sobic004G347600 Sobic004G347600 Sobic004G000100--Sobic004G347600 Sobic001G077900 Sobic001G077900 Sobic004G000100--Sobic001G077900 Sobic001G023100 Sobic001G023100 Sobic004G000100--Sobic001G023100 Sobic002G029300 Sobic002G029300 Sobic004G000100--Sobic002G029300 Sobic001G008100 Sobic001G008100 Sobic004G039400--Sobic001G008100 Sobic004G039400--Sobic001G073600 Sobic004G039400--Sobic010G040900 Sobic004G039400--Sobic001G443200 Sobic004G039400--Sobic002G262200 Sobic009G191400 Sobic009G191400 Sobic004G039400--Sobic009G191400 Sobic004G039400--Sobic004G344800 Sobic001G387200 Sobic001G387200 Sobic004G039400--Sobic001G387200 Sobic002G079700 Sobic002G079700 Sobic004G039400--Sobic002G079700 Sobic001G112400--Sobic002G262200 Sobic001G112400--Sobic001G443200 Sobic005G184200 Sobic005G184200 Sobic001G112400--Sobic005G184200 Sobic001G378200 Sobic001G378200 Sobic001G112400--Sobic001G378200 Sobic001G112400--Sobic004G347600 Sobic001G112400--Sobic004G039400 Sobic001G112400--Sobic004G344800 Sobic002G396700 Sobic002G396700 Sobic001G112400--Sobic002G396700 Sobic001G112400--Sobic001G465400 Sobic004G344800--Sobic001G073600 Sobic003G135600 Sobic003G135600 Sobic004G344800--Sobic003G135600 Sobic004G159000 Sobic004G159000 Sobic004G344800--Sobic004G159000 Sobic001G035400 Sobic001G035400 Sobic004G344800--Sobic001G035400 Sobic004G344800--Sobic009G191400 Sobic004G030000 Sobic004G030000 Sobic004G344800--Sobic004G030000 Sobic004G344800--Sobic002G262200 Sobic004G344800--Sobic002G396700 Sobic001G031900 Sobic001G031900 Sobic004G344800--Sobic001G031900 Sobic003G261800 Sobic003G261800 Sobic002G141700--Sobic003G261800 Sobic002G141700--Sobic001G443200 Sobic002G141700--Sobic001G077900 Sobic002G087000 Sobic002G087000 Sobic002G141700--Sobic002G087000 Sobic001G220900 Sobic001G220900 Sobic002G141700--Sobic001G220900 Sobic002G141700--Sobic007G173700 Sobic002G141700--Sobic002G029300 Sobic003G134800 Sobic003G134800 Sobic002G141700--Sobic003G134800 Sobic001G542900 Sobic001G542900 Sobic002G141700--Sobic001G542900 Sobic010G040900--Sobic004G039400 Sobic010G040900--Sobic001G443200 Sobic010G040900--Sobic009G191400 Sobic010G040900--Sobic001G008100 Sobic001G178500 Sobic001G178500 Sobic010G040900--Sobic001G178500 Sobic006G126000 Sobic006G126000 Sobic010G040900--Sobic006G126000 Sobic010G040900--Sobic003G261800 Sobic010G040900--Sobic003G135600 Sobic010G040900--Sobic004G344800 Sobic001G073600--Sobic009G191400 Sobic009G224400 Sobic009G224400 Sobic001G073600--Sobic009G224400 Sobic001G073600--Sobic003G135600 Sobic002G395000 Sobic002G395000 Sobic001G073600--Sobic002G395000 Sobic001G073600--Sobic004G344800 Sobic007G119600 Sobic007G119600 Sobic001G073600--Sobic007G119600 Sobic001G073600--Sobic004G347600 Sobic001G458800 Sobic001G458800 Sobic001G073600--Sobic001G458800 Sobic004G155100 Sobic004G155100 Sobic001G073600--Sobic004G155100 Sobic002G262200--Sobic004G159000 Sobic002G262200--Sobic009G224400 Sobic002G262200--Sobic002G395000 Sobic002G262200--Sobic003G135600 Sobic002G262200--Sobic004G344800 Sobic002G262200--Sobic001G073600 Sobic002G262200--Sobic001G112400 Sobic007G013900 Sobic007G013900 Sobic002G262200--Sobic007G013900 Sobic002G262200--Sobic009G191400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.