Gene annotation
Transcriptome id Sobic.004G347600.2
Synonym Sb04g037430
Functional annotation vacuolar ATP synthase subunit H, putative, expressed
UniProt A0A1Z5RQB2
Pfam PF11698 PF03224
Panther DB PTHR10698
NCBI CDD KOG2759; Vacuolar H+-ATPase V1 sector, subunit H
KEGG Orthology K02144; V-type H+-transporting ATPase subunit H
Gene Ontology GO:0000221; vacuolar proton-transporting V-type ATPase, V1 domain


Orthologs (automatic annotation)
TAIR AT3G42050 : vacuolar ATP synthase subunit H family protein
RAP-DB (Rice) LOC_Os07g36470.1 : vacuolar ATP synthase subunit H, putative, expressed
MaizeGDB (Corn) Zm00025a014869 , Zm00025a048335
Brachypodium -
Barley -
Wheat TraesCS2D02G218000 , TraesCS2A02G212100 , TraesCS2B02G237200 , TraesCS2A02G212100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
2 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
3 Sobic.003G034900 mitochondrial-processing peptidase subunit alpha, mitochondrial precursor, putative, expressed K01412: PMPCA, mitochondrial-processing peptidase subunit alpha
4 Sobic.001G458800 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed K17732: PMPCB, mitochondrial-processing peptidase subunit beta
5 Sobic.001G465400 dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed K00658: DLST, 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase)
6 Sobic.001G112400 cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed K02258: COX11, cytochrome c oxidase assembly protein subunit 11
7 Sobic.001G115700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K03934: NADH dehydrogenase (ubiquinone) Fe-S protein 1
8 Sobic.007G161200 expressed protein -
9 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
10 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
11 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1
12 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
13 Sobic.003G261800 expressed protein -
14 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
15 Sobic.002G262200 expressed protein -
16 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
17 Sobic.004G000100 uridine/cytidine kinase-like 1, putative, expressed K00876: udk, uridine kinase
18 Sobic.001G387800 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
19 Sobic.001G077900 SSA2 - 2S albumin seed storage family protein precursor, putative, expressed -
20 Sobic.008G072200 coatomer subunit delta, putative, expressed -


Gene co-expression network
sample Sobic004G347600 Sobic004G347600 Sobic009G191400 Sobic009G191400 Sobic004G347600--Sobic009G191400 Sobic001G073600 Sobic001G073600 Sobic004G347600--Sobic001G073600 Sobic003G034900 Sobic003G034900 Sobic004G347600--Sobic003G034900 Sobic001G458800 Sobic001G458800 Sobic004G347600--Sobic001G458800 Sobic001G465400 Sobic001G465400 Sobic004G347600--Sobic001G465400 Sobic001G112400 Sobic001G112400 Sobic004G347600--Sobic001G112400 Sobic001G115700 Sobic001G115700 Sobic004G347600--Sobic001G115700 Sobic007G161200 Sobic007G161200 Sobic004G347600--Sobic007G161200 Sobic001G443200 Sobic001G443200 Sobic004G347600--Sobic001G443200 Sobic009G191400--Sobic001G073600 Sobic009G224400 Sobic009G224400 Sobic009G191400--Sobic009G224400 Sobic009G191400--Sobic004G347600 Sobic007G119600 Sobic007G119600 Sobic009G191400--Sobic007G119600 Sobic003G135600 Sobic003G135600 Sobic009G191400--Sobic003G135600 Sobic004G344800 Sobic004G344800 Sobic009G191400--Sobic004G344800 Sobic002G262200 Sobic002G262200 Sobic009G191400--Sobic002G262200 Sobic009G191400--Sobic001G458800 Sobic002G396700 Sobic002G396700 Sobic009G191400--Sobic002G396700 Sobic001G073600--Sobic009G191400 Sobic001G073600--Sobic009G224400 Sobic001G073600--Sobic003G135600 Sobic002G395000 Sobic002G395000 Sobic001G073600--Sobic002G395000 Sobic001G073600--Sobic004G344800 Sobic001G073600--Sobic007G119600 Sobic001G073600--Sobic004G347600 Sobic001G073600--Sobic001G458800 Sobic004G155100 Sobic004G155100 Sobic001G073600--Sobic004G155100 Sobic003G034900--Sobic001G458800 Sobic003G034900--Sobic001G465400 Sobic004G093600 Sobic004G093600 Sobic003G034900--Sobic004G093600 Sobic003G034900--Sobic001G115700 Sobic001G047600 Sobic001G047600 Sobic003G034900--Sobic001G047600 Sobic007G171500 Sobic007G171500 Sobic003G034900--Sobic007G171500 Sobic003G034900--Sobic009G224400 Sobic003G034900--Sobic004G347600 Sobic001G457000 Sobic001G457000 Sobic003G034900--Sobic001G457000 Sobic001G458800--Sobic003G034900 Sobic001G458800--Sobic009G224400 Sobic006G058900 Sobic006G058900 Sobic001G458800--Sobic006G058900 Sobic001G458800--Sobic001G115700 Sobic001G458800--Sobic007G171500 Sobic001G458800--Sobic001G073600 Sobic002G186300 Sobic002G186300 Sobic001G458800--Sobic002G186300 Sobic001G458800--Sobic002G395000 Sobic001G031900 Sobic001G031900 Sobic001G458800--Sobic001G031900 Sobic001G465400--Sobic003G034900 Sobic006G012700 Sobic006G012700 Sobic001G465400--Sobic006G012700 Sobic001G465400--Sobic001G115700 Sobic001G378200 Sobic001G378200 Sobic001G465400--Sobic001G378200 Sobic004G078700 Sobic004G078700 Sobic001G465400--Sobic004G078700 Sobic004G000100 Sobic004G000100 Sobic001G465400--Sobic004G000100 Sobic001G465400--Sobic001G047600 Sobic001G008100 Sobic001G008100 Sobic001G465400--Sobic001G008100 Sobic001G465400--Sobic004G347600 Sobic001G112400--Sobic002G262200 Sobic001G112400--Sobic001G443200 Sobic005G184200 Sobic005G184200 Sobic001G112400--Sobic005G184200 Sobic001G112400--Sobic001G378200 Sobic001G112400--Sobic004G347600 Sobic004G039400 Sobic004G039400 Sobic001G112400--Sobic004G039400 Sobic001G112400--Sobic004G344800 Sobic001G112400--Sobic002G396700 Sobic001G112400--Sobic001G465400 Sobic001G115700--Sobic001G458800 Sobic001G115700--Sobic003G034900 Sobic001G115700--Sobic001G465400 Sobic008G072200 Sobic008G072200 Sobic001G115700--Sobic008G072200 Sobic001G115700--Sobic004G347600 Sobic005G018800 Sobic005G018800 Sobic001G115700--Sobic005G018800 Sobic001G115700--Sobic009G191400 Sobic003G200800 Sobic003G200800 Sobic001G115700--Sobic003G200800 Sobic001G115700--Sobic002G186300 Sobic004G060100 Sobic004G060100 Sobic007G161200--Sobic004G060100 Sobic007G161200--Sobic003G200800 Sobic007G161200--Sobic005G018800 Sobic009G256000 Sobic009G256000 Sobic007G161200--Sobic009G256000 Sobic007G161200--Sobic004G347600 Sobic008G021200 Sobic008G021200 Sobic007G161200--Sobic008G021200 Sobic007G161200--Sobic001G115700 Sobic008G150300 Sobic008G150300 Sobic007G161200--Sobic008G150300 Sobic004G283600 Sobic004G283600 Sobic007G161200--Sobic004G283600 Sobic008G102600 Sobic008G102600 Sobic001G443200--Sobic008G102600 Sobic001G443200--Sobic004G000100 Sobic001G443200--Sobic004G039400 Sobic001G443200--Sobic001G112400 Sobic001G443200--Sobic004G344800 Sobic002G141700 Sobic002G141700 Sobic001G443200--Sobic002G141700 Sobic010G040900 Sobic010G040900 Sobic001G443200--Sobic010G040900 Sobic001G443200--Sobic001G073600 Sobic001G443200--Sobic002G262200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.