Gene annotation
Transcriptome id Sobic.001G387800.1
Synonym TOM40, Sb01g036760
Functional annotation outer mitochondrial membrane porin, putative, expressed
UniProt C5X1R7
Pfam PF01459
Panther DB PTHR10802 PTHR10802:SF4
NCBI CDD KOG3296; Translocase of outer mitochondrial membrane complex, subunit TOM40
KEGG Orthology K11518; mitochondrial import receptor subunit TOM40
Gene Ontology GO:0005741; mitochondrial outer membrane


Orthologs (automatic annotation)
TAIR AT3G20000 : translocase of the outer mitochondrial membrane 40
RAP-DB (Rice) LOC_Os03g20750.1 : outer mitochondrial membrane porin, putative, expressed
MaizeGDB (Corn) Zm00025a052477 , Zm00025a002262 , Zm00025a035209 , Zm00025a024130 , Zm00025a038142
Brachypodium KQK21895
Barley HORVU4Hr1G051720.1
Wheat TraesCS4B02G175300 , TraesCS4A02G129200 , TraesCS4D02G177200
Populus -


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cDNA sequences
Sobic.001G387800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G196200 elongation factor TS family protein, expressed -
2 Sobic.001G178500 chloroplast 30S ribosomal protein S19, putative, expressed K02965: RP-S19, small subunit ribosomal protein S19
3 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
4 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
5 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1
6 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
7 Sobic.002G079700 ribosomal protein L22, putative, expressed K02890: RP-L22, MRPL22, large subunit ribosomal protein L22
8 Sobic.007G206300 ribosomal protein S17, putative, expressed K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
9 Sobic.001G465400 dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed K00658: DLST, 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase)
10 Sobic.003G034900 mitochondrial-processing peptidase subunit alpha, mitochondrial precursor, putative, expressed K01412: PMPCA, mitochondrial-processing peptidase subunit alpha
11 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
12 Sobic.008G110500 UDP-N-acetylglucosamine transferase subunit ALG13, putative, expressed K07432: beta-1,4-N-acetylglucosaminyltransferase
13 Sobic.006G041800 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
14 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
15 Sobic.008G102600 expressed protein -
16 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
17 Sobic.004G045300 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
18 Sobic.003G261800 expressed protein -
19 Sobic.010G040900 trafficking protein particle complex subunit 4, putative, expressed -
20 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta


Gene co-expression network
sample Sobic001G387800 Sobic001G387800 Sobic003G196200 Sobic003G196200 Sobic001G387800--Sobic003G196200 Sobic001G178500 Sobic001G178500 Sobic001G387800--Sobic001G178500 Sobic001G008100 Sobic001G008100 Sobic001G387800--Sobic001G008100 Sobic004G039400 Sobic004G039400 Sobic001G387800--Sobic004G039400 Sobic007G119600 Sobic007G119600 Sobic001G387800--Sobic007G119600 Sobic009G191400 Sobic009G191400 Sobic001G387800--Sobic009G191400 Sobic002G079700 Sobic002G079700 Sobic001G387800--Sobic002G079700 Sobic007G206300 Sobic007G206300 Sobic001G387800--Sobic007G206300 Sobic001G465400 Sobic001G465400 Sobic001G387800--Sobic001G465400 Sobic003G196200--Sobic001G387800 Sobic008G102600 Sobic008G102600 Sobic003G196200--Sobic008G102600 Sobic001G077900 Sobic001G077900 Sobic003G196200--Sobic001G077900 Sobic004G045300 Sobic004G045300 Sobic003G196200--Sobic004G045300 Sobic001G161700 Sobic001G161700 Sobic003G196200--Sobic001G161700 Sobic003G196200--Sobic001G178500 Sobic008G110500 Sobic008G110500 Sobic003G196200--Sobic008G110500 Sobic004G000100 Sobic004G000100 Sobic003G196200--Sobic004G000100 Sobic001G473800 Sobic001G473800 Sobic003G196200--Sobic001G473800 Sobic001G178500--Sobic002G079700 Sobic001G178500--Sobic001G387800 Sobic001G060300 Sobic001G060300 Sobic001G178500--Sobic001G060300 Sobic010G040900 Sobic010G040900 Sobic001G178500--Sobic010G040900 Sobic001G178500--Sobic007G119600 Sobic003G135600 Sobic003G135600 Sobic001G178500--Sobic003G135600 Sobic001G178500--Sobic009G191400 Sobic007G171500 Sobic007G171500 Sobic001G178500--Sobic007G171500 Sobic001G443200 Sobic001G443200 Sobic001G178500--Sobic001G443200 Sobic001G008100--Sobic004G039400 Sobic006G041800 Sobic006G041800 Sobic001G008100--Sobic006G041800 Sobic001G008100--Sobic001G465400 Sobic001G008100--Sobic010G040900 Sobic001G008100--Sobic001G387800 Sobic003G276100 Sobic003G276100 Sobic001G008100--Sobic003G276100 Sobic001G008100--Sobic002G079700 Sobic001G008100--Sobic009G191400 Sobic002G276800 Sobic002G276800 Sobic001G008100--Sobic002G276800 Sobic004G039400--Sobic001G008100 Sobic001G073600 Sobic001G073600 Sobic004G039400--Sobic001G073600 Sobic004G039400--Sobic010G040900 Sobic004G039400--Sobic001G443200 Sobic002G262200 Sobic002G262200 Sobic004G039400--Sobic002G262200 Sobic004G039400--Sobic009G191400 Sobic004G344800 Sobic004G344800 Sobic004G039400--Sobic004G344800 Sobic001G387200 Sobic001G387200 Sobic004G039400--Sobic001G387200 Sobic004G039400--Sobic002G079700 Sobic009G224400 Sobic009G224400 Sobic007G119600--Sobic009G224400 Sobic007G119600--Sobic009G191400 Sobic007G119600--Sobic006G041800 Sobic001G457000 Sobic001G457000 Sobic007G119600--Sobic001G457000 Sobic007G119600--Sobic001G073600 Sobic002G255400 Sobic002G255400 Sobic007G119600--Sobic002G255400 Sobic003G028200 Sobic003G028200 Sobic007G119600--Sobic003G028200 Sobic003G388700 Sobic003G388700 Sobic007G119600--Sobic003G388700 Sobic003G260600 Sobic003G260600 Sobic007G119600--Sobic003G260600 Sobic009G191400--Sobic001G073600 Sobic009G191400--Sobic009G224400 Sobic004G347600 Sobic004G347600 Sobic009G191400--Sobic004G347600 Sobic009G191400--Sobic007G119600 Sobic009G191400--Sobic003G135600 Sobic009G191400--Sobic004G344800 Sobic009G191400--Sobic002G262200 Sobic001G458800 Sobic001G458800 Sobic009G191400--Sobic001G458800 Sobic002G396700 Sobic002G396700 Sobic009G191400--Sobic002G396700 Sobic002G079700--Sobic001G178500 Sobic002G079700--Sobic003G135600 Sobic002G079700--Sobic004G039400 Sobic002G079700--Sobic001G008100 Sobic002G079700--Sobic009G191400 Sobic002G079700--Sobic004G045300 Sobic002G079700--Sobic009G224400 Sobic002G079700--Sobic003G388700 Sobic002G079700--Sobic001G073600 Sobic007G206300--Sobic001G008100 Sobic007G206300--Sobic001G387800 Sobic007G206300--Sobic007G119600 Sobic001G112400 Sobic001G112400 Sobic007G206300--Sobic001G112400 Sobic007G206300--Sobic004G039400 Sobic001G304000 Sobic001G304000 Sobic007G206300--Sobic001G304000 Sobic007G206300--Sobic001G178500 Sobic007G206300--Sobic006G041800 Sobic007G206300--Sobic009G224400 Sobic003G034900 Sobic003G034900 Sobic001G465400--Sobic003G034900 Sobic006G012700 Sobic006G012700 Sobic001G465400--Sobic006G012700 Sobic001G115700 Sobic001G115700 Sobic001G465400--Sobic001G115700 Sobic001G378200 Sobic001G378200 Sobic001G465400--Sobic001G378200 Sobic004G078700 Sobic004G078700 Sobic001G465400--Sobic004G078700 Sobic001G465400--Sobic004G000100 Sobic001G047600 Sobic001G047600 Sobic001G465400--Sobic001G047600 Sobic001G465400--Sobic001G008100 Sobic001G465400--Sobic004G347600
Octagon: transcription factors


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