Gene annotation
Transcriptome id Sobic.004G045300.1
Synonym emb2386, Sb04g003890
Functional annotation 60S ribosomal protein L19-3, putative, expressed
UniProt C5XVB3
Pfam PF01280
Panther DB PTHR10722
NCBI CDD KOG1696; 60s ribosomal protein L19
KEGG Orthology K02885; RP-L19e, large subunit ribosomal protein L19e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G16780 : Ribosomal protein L19e family protein
RAP-DB (Rice) LOC_Os03g38260.1 : 60S ribosomal protein L19-3, putative, expressed
MaizeGDB (Corn) Zm00025a028489 , Zm00025a019017 , Zm00025a034870
Brachypodium KQK14665
Barley -
Wheat TraesCS4A02G137200
Populus -


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cDNA sequences
Sobic.004G045300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G079700 ribosomal protein L22, putative, expressed K02890: RP-L22, MRPL22, large subunit ribosomal protein L22
2 Sobic.003G196200 elongation factor TS family protein, expressed -
3 Sobic.008G102600 expressed protein -
4 Sobic.001G387800 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
5 Sobic.001G178500 chloroplast 30S ribosomal protein S19, putative, expressed K02965: RP-S19, small subunit ribosomal protein S19
6 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
7 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
8 Sobic.007G012900 50S ribosomal protein L19, chloroplast precursor, putative, expressed -
9 Sobic.010G040900 trafficking protein particle complex subunit 4, putative, expressed -
10 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -
11 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
12 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
13 Sobic.001G518500 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
14 Sobic.010G008800 defender against cell death 1, putative, expressed K12668: OST2, oligosaccharyltransferase complex subunit epsilon
15 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
16 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
17 Sobic.003G276100 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
18 Sobic.002G249800 DnaK family protein, putative, expressed K04043: dnaK, molecular chaperone DnaK
19 Sobic.009G112900 expressed protein K18170: LYRM7, complex III assembly factor LYRM7
20 Sobic.002G262200 expressed protein -


Gene co-expression network
sample Sobic004G045300 Sobic004G045300 Sobic002G079700 Sobic002G079700 Sobic004G045300--Sobic002G079700 Sobic003G196200 Sobic003G196200 Sobic004G045300--Sobic003G196200 Sobic008G102600 Sobic008G102600 Sobic004G045300--Sobic008G102600 Sobic001G387800 Sobic001G387800 Sobic004G045300--Sobic001G387800 Sobic001G178500 Sobic001G178500 Sobic004G045300--Sobic001G178500 Sobic004G039400 Sobic004G039400 Sobic004G045300--Sobic004G039400 Sobic001G073600 Sobic001G073600 Sobic004G045300--Sobic001G073600 Sobic007G012900 Sobic007G012900 Sobic004G045300--Sobic007G012900 Sobic010G040900 Sobic010G040900 Sobic004G045300--Sobic010G040900 Sobic002G079700--Sobic001G178500 Sobic003G135600 Sobic003G135600 Sobic002G079700--Sobic003G135600 Sobic002G079700--Sobic004G039400 Sobic001G008100 Sobic001G008100 Sobic002G079700--Sobic001G008100 Sobic009G191400 Sobic009G191400 Sobic002G079700--Sobic009G191400 Sobic002G079700--Sobic004G045300 Sobic009G224400 Sobic009G224400 Sobic002G079700--Sobic009G224400 Sobic003G388700 Sobic003G388700 Sobic002G079700--Sobic003G388700 Sobic002G079700--Sobic001G073600 Sobic003G196200--Sobic001G387800 Sobic003G196200--Sobic008G102600 Sobic001G077900 Sobic001G077900 Sobic003G196200--Sobic001G077900 Sobic003G196200--Sobic004G045300 Sobic001G161700 Sobic001G161700 Sobic003G196200--Sobic001G161700 Sobic003G196200--Sobic001G178500 Sobic008G110500 Sobic008G110500 Sobic003G196200--Sobic008G110500 Sobic004G000100 Sobic004G000100 Sobic003G196200--Sobic004G000100 Sobic001G473800 Sobic001G473800 Sobic003G196200--Sobic001G473800 Sobic001G443200 Sobic001G443200 Sobic008G102600--Sobic001G443200 Sobic009G112900 Sobic009G112900 Sobic008G102600--Sobic009G112900 Sobic008G102600--Sobic003G196200 Sobic008G102600--Sobic004G000100 Sobic008G102600--Sobic004G045300 Sobic008G102600--Sobic008G110500 Sobic008G102600--Sobic001G387800 Sobic001G112400 Sobic001G112400 Sobic008G102600--Sobic001G112400 Sobic008G102600--Sobic004G039400 Sobic001G387800--Sobic003G196200 Sobic001G387800--Sobic001G178500 Sobic001G387800--Sobic001G008100 Sobic001G387800--Sobic004G039400 Sobic007G119600 Sobic007G119600 Sobic001G387800--Sobic007G119600 Sobic001G387800--Sobic009G191400 Sobic001G387800--Sobic002G079700 Sobic007G206300 Sobic007G206300 Sobic001G387800--Sobic007G206300 Sobic001G465400 Sobic001G465400 Sobic001G387800--Sobic001G465400 Sobic001G178500--Sobic002G079700 Sobic001G178500--Sobic001G387800 Sobic001G060300 Sobic001G060300 Sobic001G178500--Sobic001G060300 Sobic001G178500--Sobic010G040900 Sobic001G178500--Sobic007G119600 Sobic001G178500--Sobic003G135600 Sobic001G178500--Sobic009G191400 Sobic007G171500 Sobic007G171500 Sobic001G178500--Sobic007G171500 Sobic001G178500--Sobic001G443200 Sobic004G039400--Sobic001G008100 Sobic004G039400--Sobic001G073600 Sobic004G039400--Sobic010G040900 Sobic004G039400--Sobic001G443200 Sobic002G262200 Sobic002G262200 Sobic004G039400--Sobic002G262200 Sobic004G039400--Sobic009G191400 Sobic004G344800 Sobic004G344800 Sobic004G039400--Sobic004G344800 Sobic001G387200 Sobic001G387200 Sobic004G039400--Sobic001G387200 Sobic004G039400--Sobic002G079700 Sobic001G073600--Sobic009G191400 Sobic001G073600--Sobic009G224400 Sobic001G073600--Sobic003G135600 Sobic002G395000 Sobic002G395000 Sobic001G073600--Sobic002G395000 Sobic001G073600--Sobic004G344800 Sobic001G073600--Sobic007G119600 Sobic004G347600 Sobic004G347600 Sobic001G073600--Sobic004G347600 Sobic001G458800 Sobic001G458800 Sobic001G073600--Sobic001G458800 Sobic004G155100 Sobic004G155100 Sobic001G073600--Sobic004G155100 Sobic001G181500 Sobic001G181500 Sobic007G012900--Sobic001G181500 Sobic003G276100 Sobic003G276100 Sobic007G012900--Sobic003G276100 Sobic002G401700 Sobic002G401700 Sobic007G012900--Sobic002G401700 Sobic007G012900--Sobic001G008100 Sobic006G041800 Sobic006G041800 Sobic007G012900--Sobic006G041800 Sobic003G148900 Sobic003G148900 Sobic007G012900--Sobic003G148900 Sobic007G012900--Sobic003G135600 Sobic007G012900--Sobic009G191400 Sobic007G012900--Sobic002G079700 Sobic010G040900--Sobic004G039400 Sobic010G040900--Sobic001G443200 Sobic010G040900--Sobic009G191400 Sobic010G040900--Sobic001G008100 Sobic010G040900--Sobic001G178500 Sobic006G126000 Sobic006G126000 Sobic010G040900--Sobic006G126000 Sobic003G261800 Sobic003G261800 Sobic010G040900--Sobic003G261800 Sobic010G040900--Sobic003G135600 Sobic010G040900--Sobic004G344800
Octagon: transcription factors


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