Gene annotation
Transcriptome id Sobic.003G196200.3,Sobic.003G196200.1,Sobic.003G196200.2
Synonym Sb03g025910
Functional annotation elongation factor TS family protein, expressed
UniProt A0A1B6Q4A5 , A0A1B6Q4A8
Pfam PF00889
Panther DB PTHR11741
NCBI CDD KOG1071; Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt
KEGG Orthology -
Gene Ontology GO:0006414; translational elongation GO:0005622intracellular GO:0003746translation elongation factor activity


Orthologs (automatic annotation)
TAIR AT4G11120 : translation elongation factor Ts (EF-Ts), putative
RAP-DB (Rice) LOC_Os12g35630.1 : elongation factor TS family protein, expressed
MaizeGDB (Corn) Zm00025a028472
Brachypodium KQK19249 , KQJ93818 , KQK19248 , PNT76336
Barley HORVU7Hr1G080870.7 , HORVU7Hr1G080870.1 , HORVU7Hr1G080870.8 , HORVU7Hr1G080870.9 , HORVU7Hr1G080870.4 , HORVU7Hr1G080870.5 , HORVU7Hr1G080870.6 , HORVU7Hr1G080870.2 , HORVU7Hr1G080870.3
Wheat TraesCS7D02G336200 , TraesCS7A02G343400 , TraesCS7A02G343400 , TraesCS7B02G239700 , TraesCS5A02G009300 , TraesCS7B02G239700 , TraesCS7B02G239700 , TraesCS7B02G239700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G387800 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
2 Sobic.008G102600 expressed protein -
3 Sobic.001G077900 SSA2 - 2S albumin seed storage family protein precursor, putative, expressed -
4 Sobic.004G045300 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
5 Sobic.001G161700 vesicle-fusing ATPase, putative, expressed K06027: NSF, vesicle-fusing ATPase
6 Sobic.001G178500 chloroplast 30S ribosomal protein S19, putative, expressed K02965: RP-S19, small subunit ribosomal protein S19
7 Sobic.008G110500 UDP-N-acetylglucosamine transferase subunit ALG13, putative, expressed K07432: beta-1,4-N-acetylglucosaminyltransferase
8 Sobic.004G000100 uridine/cytidine kinase-like 1, putative, expressed K00876: udk, uridine kinase
9 Sobic.001G473800 trpH, putative, expressed K07053: 3',5'-nucleoside bisphosphate phosphatase
10 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
11 Sobic.003G388900 PPR repeat domain containing protein, putative, expressed -
12 Sobic.006G029000 nicotiana lesion-inducing like, putative, expressed -
13 Sobic.002G079700 ribosomal protein L22, putative, expressed K02890: RP-L22, MRPL22, large subunit ribosomal protein L22
14 Sobic.001G520300 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit precursor, putative, expressed K12666: OST1, oligosaccharyltransferase complex subunit alpha (ribophorin I)
15 Sobic.010G040900 trafficking protein particle complex subunit 4, putative, expressed -
16 Sobic.002G249800 DnaK family protein, putative, expressed K04043: dnaK, molecular chaperone DnaK
17 Sobic.003G205400 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
18 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
19 Sobic.002G295900 ribosomal protein S15 containing protein, expressed -
20 Sobic.001G304000 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase


Gene co-expression network
sample Sobic003G196200 Sobic003G196200 Sobic001G387800 Sobic001G387800 Sobic003G196200--Sobic001G387800 Sobic008G102600 Sobic008G102600 Sobic003G196200--Sobic008G102600 Sobic001G077900 Sobic001G077900 Sobic003G196200--Sobic001G077900 Sobic004G045300 Sobic004G045300 Sobic003G196200--Sobic004G045300 Sobic001G161700 Sobic001G161700 Sobic003G196200--Sobic001G161700 Sobic001G178500 Sobic001G178500 Sobic003G196200--Sobic001G178500 Sobic008G110500 Sobic008G110500 Sobic003G196200--Sobic008G110500 Sobic004G000100 Sobic004G000100 Sobic003G196200--Sobic004G000100 Sobic001G473800 Sobic001G473800 Sobic003G196200--Sobic001G473800 Sobic001G387800--Sobic003G196200 Sobic001G387800--Sobic001G178500 Sobic001G008100 Sobic001G008100 Sobic001G387800--Sobic001G008100 Sobic004G039400 Sobic004G039400 Sobic001G387800--Sobic004G039400 Sobic007G119600 Sobic007G119600 Sobic001G387800--Sobic007G119600 Sobic009G191400 Sobic009G191400 Sobic001G387800--Sobic009G191400 Sobic002G079700 Sobic002G079700 Sobic001G387800--Sobic002G079700 Sobic007G206300 Sobic007G206300 Sobic001G387800--Sobic007G206300 Sobic001G465400 Sobic001G465400 Sobic001G387800--Sobic001G465400 Sobic001G443200 Sobic001G443200 Sobic008G102600--Sobic001G443200 Sobic009G112900 Sobic009G112900 Sobic008G102600--Sobic009G112900 Sobic008G102600--Sobic003G196200 Sobic008G102600--Sobic004G000100 Sobic008G102600--Sobic004G045300 Sobic008G102600--Sobic008G110500 Sobic008G102600--Sobic001G387800 Sobic001G112400 Sobic001G112400 Sobic008G102600--Sobic001G112400 Sobic008G102600--Sobic004G039400 Sobic001G077900--Sobic001G443200 Sobic002G141700 Sobic002G141700 Sobic001G077900--Sobic002G141700 Sobic001G077900--Sobic003G196200 Sobic001G077900--Sobic001G161700 Sobic003G009300 Sobic003G009300 Sobic001G077900--Sobic003G009300 Sobic001G490500 Sobic001G490500 Sobic001G077900--Sobic001G490500 Sobic006G029000 Sobic006G029000 Sobic001G077900--Sobic006G029000 Sobic001G077900--Sobic004G000100 Sobic006G232000 Sobic006G232000 Sobic001G077900--Sobic006G232000 Sobic004G045300--Sobic002G079700 Sobic004G045300--Sobic003G196200 Sobic004G045300--Sobic008G102600 Sobic004G045300--Sobic001G387800 Sobic004G045300--Sobic001G178500 Sobic004G045300--Sobic004G039400 Sobic001G073600 Sobic001G073600 Sobic004G045300--Sobic001G073600 Sobic007G012900 Sobic007G012900 Sobic004G045300--Sobic007G012900 Sobic010G040900 Sobic010G040900 Sobic004G045300--Sobic010G040900 Sobic002G070600 Sobic002G070600 Sobic001G161700--Sobic002G070600 Sobic008G072200 Sobic008G072200 Sobic001G161700--Sobic008G072200 Sobic001G161700--Sobic001G490500 Sobic001G012900 Sobic001G012900 Sobic001G161700--Sobic001G012900 Sobic001G023100 Sobic001G023100 Sobic001G161700--Sobic001G023100 Sobic003G346400 Sobic003G346400 Sobic001G161700--Sobic003G346400 Sobic001G161700--Sobic004G000100 Sobic004G254800 Sobic004G254800 Sobic001G161700--Sobic004G254800 Sobic008G085700 Sobic008G085700 Sobic001G161700--Sobic008G085700 Sobic001G178500--Sobic002G079700 Sobic001G178500--Sobic001G387800 Sobic001G060300 Sobic001G060300 Sobic001G178500--Sobic001G060300 Sobic001G178500--Sobic010G040900 Sobic001G178500--Sobic007G119600 Sobic003G135600 Sobic003G135600 Sobic001G178500--Sobic003G135600 Sobic001G178500--Sobic009G191400 Sobic007G171500 Sobic007G171500 Sobic001G178500--Sobic007G171500 Sobic001G178500--Sobic001G443200 Sobic008G110500--Sobic001G443200 Sobic003G148900 Sobic003G148900 Sobic008G110500--Sobic003G148900 Sobic008G110500--Sobic008G102600 Sobic008G110500--Sobic001G387800 Sobic008G145100 Sobic008G145100 Sobic008G110500--Sobic008G145100 Sobic008G110500--Sobic010G040900 Sobic005G184200 Sobic005G184200 Sobic008G110500--Sobic005G184200 Sobic001G542900 Sobic001G542900 Sobic008G110500--Sobic001G542900 Sobic008G110500--Sobic003G196200 Sobic007G173700 Sobic007G173700 Sobic004G000100--Sobic007G173700 Sobic004G000100--Sobic001G443200 Sobic004G000100--Sobic001G465400 Sobic004G000100--Sobic001G161700 Sobic004G000100--Sobic008G102600 Sobic004G347600 Sobic004G347600 Sobic004G000100--Sobic004G347600 Sobic004G000100--Sobic001G077900 Sobic004G000100--Sobic001G023100 Sobic002G029300 Sobic002G029300 Sobic004G000100--Sobic002G029300 Sobic005G111900 Sobic005G111900 Sobic001G473800--Sobic005G111900 Sobic001G473800--Sobic003G196200 Sobic001G304000 Sobic001G304000 Sobic001G473800--Sobic001G304000 Sobic001G473800--Sobic001G387800 Sobic001G473800--Sobic008G110500 Sobic001G473800--Sobic001G178500 Sobic002G199400 Sobic002G199400 Sobic001G473800--Sobic002G199400 Sobic002G402500 Sobic002G402500 Sobic001G473800--Sobic002G402500 Sobic001G473800--Sobic006G029000
Octagon: transcription factors


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