Gene annotation
Transcriptome id Sobic.003G388900.1
Synonym Sb03g042680
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5XFD1
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF751
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G02650 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g67210.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a026426
Brachypodium PNT73374
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
2 Sobic.002G402500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
3 Sobic.001G522000 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
4 Sobic.003G202100 Uncharacterized ACR, COG1565 containing protein, putative, expressed K18164: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7
5 Sobic.004G212100 PPR repeat domain containing protein, putative, expressed -
6 Sobic.001G304000 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
7 Sobic.002G295900 ribosomal protein S15 containing protein, expressed -
8 Sobic.001G413100 nucleotide binding protein, putative, expressed -
9 Sobic.003G205400 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
10 Sobic.003G196200 elongation factor TS family protein, expressed -
11 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
12 Sobic.002G071100 expressed protein K17408: DAP3, small subunit ribosomal protein S29
13 Sobic.001G387800 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
14 Sobic.001G011000 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
15 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
16 Sobic.002G364900 PPR repeat domain containing protein, putative, expressed -
17 Sobic.004G215700 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
18 Sobic.001G214900 expressed protein -
19 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
20 Sobic.005G163700 T-complex protein, putative, expressed K09500: T-complex protein 1 subunit theta


Gene co-expression network
sample Sobic003G388900 Sobic003G388900 Sobic002G367800 Sobic002G367800 Sobic003G388900--Sobic002G367800 Sobic002G402500 Sobic002G402500 Sobic003G388900--Sobic002G402500 Sobic001G522000 Sobic001G522000 Sobic003G388900--Sobic001G522000 Sobic003G202100 Sobic003G202100 Sobic003G388900--Sobic003G202100 Sobic004G212100 Sobic004G212100 Sobic003G388900--Sobic004G212100 Sobic001G304000 Sobic001G304000 Sobic003G388900--Sobic001G304000 Sobic002G295900 Sobic002G295900 Sobic003G388900--Sobic002G295900 Sobic001G413100 Sobic001G413100 Sobic003G388900--Sobic001G413100 Sobic003G205400 Sobic003G205400 Sobic003G388900--Sobic003G205400 Sobic002G367800--Sobic004G212100 Sobic001G011000 Sobic001G011000 Sobic002G367800--Sobic001G011000 Sobic002G367800--Sobic003G388900 Sobic009G041800 Sobic009G041800 Sobic002G367800--Sobic009G041800 Sobic002G367800--Sobic001G522000 Sobic004G356300 Sobic004G356300 Sobic002G367800--Sobic004G356300 Sobic001G214900 Sobic001G214900 Sobic002G367800--Sobic001G214900 Sobic002G071100 Sobic002G071100 Sobic002G367800--Sobic002G071100 Sobic002G070300 Sobic002G070300 Sobic002G367800--Sobic002G070300 Sobic003G326900 Sobic003G326900 Sobic002G402500--Sobic003G326900 Sobic002G402500--Sobic003G205400 Sobic002G402500--Sobic003G388900 Sobic001G060300 Sobic001G060300 Sobic002G402500--Sobic001G060300 Sobic002G402500--Sobic001G214900 Sobic002G402500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G402500--Sobic006G041100 Sobic002G402500--Sobic002G367800 Sobic003G113400 Sobic003G113400 Sobic002G402500--Sobic003G113400 Sobic001G522000--Sobic002G367800 Sobic002G423500 Sobic002G423500 Sobic001G522000--Sobic002G423500 Sobic001G490500 Sobic001G490500 Sobic001G522000--Sobic001G490500 Sobic001G522000--Sobic006G041100 Sobic001G522000--Sobic003G388900 Sobic001G522000--Sobic003G205400 Sobic001G522000--Sobic002G402500 Sobic006G265600 Sobic006G265600 Sobic001G522000--Sobic006G265600 Sobic001G117800 Sobic001G117800 Sobic001G522000--Sobic001G117800 Sobic009G260700 Sobic009G260700 Sobic003G202100--Sobic009G260700 Sobic008G171400 Sobic008G171400 Sobic003G202100--Sobic008G171400 Sobic003G202100--Sobic001G304000 Sobic001G537100 Sobic001G537100 Sobic003G202100--Sobic001G537100 Sobic003G304400 Sobic003G304400 Sobic003G202100--Sobic003G304400 Sobic003G392600 Sobic003G392600 Sobic003G202100--Sobic003G392600 Sobic003G202100--Sobic002G071100 Sobic003G202100--Sobic003G388900 Sobic003G166500 Sobic003G166500 Sobic003G202100--Sobic003G166500 Sobic004G212100--Sobic002G367800 Sobic004G212100--Sobic001G011000 Sobic004G212100--Sobic009G041800 Sobic004G212100--Sobic003G388900 Sobic004G212100--Sobic002G070300 Sobic001G161700 Sobic001G161700 Sobic004G212100--Sobic001G161700 Sobic004G034300 Sobic004G034300 Sobic004G212100--Sobic004G034300 Sobic004G212100--Sobic001G522000 Sobic004G212100--Sobic001G490500 Sobic001G304000--Sobic003G202100 Sobic001G304000--Sobic008G171400 Sobic005G018800 Sobic005G018800 Sobic001G304000--Sobic005G018800 Sobic001G304000--Sobic002G071100 Sobic001G304000--Sobic003G388900 Sobic006G020900 Sobic006G020900 Sobic001G304000--Sobic006G020900 Sobic001G178500 Sobic001G178500 Sobic001G304000--Sobic001G178500 Sobic007G206300 Sobic007G206300 Sobic001G304000--Sobic007G206300 Sobic008G168200 Sobic008G168200 Sobic001G304000--Sobic008G168200 Sobic009G249800 Sobic009G249800 Sobic002G295900--Sobic009G249800 Sobic002G295900--Sobic003G388900 Sobic002G295900--Sobic001G304000 Sobic002G295900--Sobic004G212100 Sobic002G295900--Sobic002G367800 Sobic002G295900--Sobic001G490500 Sobic003G196200 Sobic003G196200 Sobic002G295900--Sobic003G196200 Sobic006G029000 Sobic006G029000 Sobic002G295900--Sobic006G029000 Sobic002G295900--Sobic001G161700 Sobic010G134100 Sobic010G134100 Sobic001G413100--Sobic010G134100 Sobic001G167500 Sobic001G167500 Sobic001G413100--Sobic001G167500 Sobic001G413100--Sobic009G041800 Sobic008G084100 Sobic008G084100 Sobic001G413100--Sobic008G084100 Sobic004G069400 Sobic004G069400 Sobic001G413100--Sobic004G069400 Sobic001G176900 Sobic001G176900 Sobic001G413100--Sobic001G176900 Sobic002G304400 Sobic002G304400 Sobic001G413100--Sobic002G304400 Sobic001G413100--Sobic003G388900 Sobic003G388700 Sobic003G388700 Sobic001G413100--Sobic003G388700 Sobic003G205400--Sobic002G402500 Sobic003G205400--Sobic001G214900 Sobic003G205400--Sobic001G522000 Sobic003G205400--Sobic003G388900 Sobic003G205400--Sobic002G367800 Sobic010G277000 Sobic010G277000 Sobic003G205400--Sobic010G277000 Sobic003G205400--Sobic010G134100 Sobic003G205400--Sobic001G413100 Sobic003G205400--Sobic002G423500
Octagon: transcription factors


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