Gene annotation
Transcriptome id Sobic.004G215700.1
Synonym RANGAP2, Sb04g026090
Functional annotation RAN GTPase-activating protein 1, putative, expressed
UniProt C5XXP2
Pfam PF13943
Panther DB PTHR24106 PTHR24106:SF156
NCBI CDD KOG1909; Ran GTPase-activating protein
KEGG Orthology K14319; Ran GTPase-activating protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G63130 : RAN GTPase activating protein 1
RAP-DB (Rice) LOC_Os05g46560.2 : RAN GTPase-activating protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a021140 , Zm00025a031985 , Zm00025a024221
Brachypodium PNT66669 , KQJ98353 , KQJ98352
Barley HORVU1Hr1G063300.5 , HORVU3Hr1G090080.4 , HORVU3Hr1G090080.1 , HORVU3Hr1G090080.2 , HORVU3Hr1G090080.3 , HORVU1Hr1G063300.3 , HORVU1Hr1G063300.2 , HORVU1Hr1G063300.1 , HORVU1Hr1G063300.4
Wheat TraesCS3A02G400100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
2 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
3 Sobic.005G163700 T-complex protein, putative, expressed K09500: T-complex protein 1 subunit theta
4 Sobic.006G024700 pumilio-family RNA binding repeat containing protein, expressed -
5 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
6 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
7 Sobic.003G008600 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed K15029: translation initiation factor 3 subunit L
8 Sobic.003G388900 PPR repeat domain containing protein, putative, expressed -
9 Sobic.004G212100 PPR repeat domain containing protein, putative, expressed -
10 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
11 Sobic.001G228200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
12 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
13 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
14 Sobic.001G368100 expressed protein K18158: nuclear control of ATPase protein 2
15 Sobic.008G072200 coatomer subunit delta, putative, expressed -
16 Sobic.004G336300 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
17 Sobic.002G319200 expressed protein K11490: condensin-2 complex subunit H2
18 Sobic.002G014400 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
19 Sobic.002G313600 src homology-3 domain protein 3, putative, expressed -
20 Sobic.010G236600 oligopeptidase, putative, expressed K01410: mitochondrial intermediate peptidase


Gene co-expression network
sample Sobic004G215700 Sobic004G215700 Sobic002G423500 Sobic002G423500 Sobic004G215700--Sobic002G423500 Sobic004G326600 Sobic004G326600 Sobic004G215700--Sobic004G326600 Sobic005G163700 Sobic005G163700 Sobic004G215700--Sobic005G163700 Sobic006G024700 Sobic006G024700 Sobic004G215700--Sobic006G024700 Sobic004G047200 Sobic004G047200 Sobic004G215700--Sobic004G047200 Sobic001G460500 Sobic001G460500 Sobic004G215700--Sobic001G460500 Sobic003G008600 Sobic003G008600 Sobic004G215700--Sobic003G008600 Sobic003G388900 Sobic003G388900 Sobic004G215700--Sobic003G388900 Sobic004G212100 Sobic004G212100 Sobic004G215700--Sobic004G212100 Sobic002G423500--Sobic005G163700 Sobic002G423500--Sobic004G047200 Sobic002G014400 Sobic002G014400 Sobic002G423500--Sobic002G014400 Sobic002G423500--Sobic001G460500 Sobic002G423500--Sobic004G326600 Sobic002G423500--Sobic004G215700 Sobic001G522000 Sobic001G522000 Sobic002G423500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G423500--Sobic006G041100 Sobic001G467100 Sobic001G467100 Sobic002G423500--Sobic001G467100 Sobic004G326600--Sobic004G047200 Sobic004G326600--Sobic002G014400 Sobic004G326600--Sobic002G423500 Sobic001G091900 Sobic001G091900 Sobic004G326600--Sobic001G091900 Sobic004G326600--Sobic004G215700 Sobic002G341800 Sobic002G341800 Sobic004G326600--Sobic002G341800 Sobic004G326600--Sobic005G163700 Sobic002G143000 Sobic002G143000 Sobic004G326600--Sobic002G143000 Sobic001G458700 Sobic001G458700 Sobic004G326600--Sobic001G458700 Sobic005G163700--Sobic001G460500 Sobic005G163700--Sobic002G423500 Sobic005G163700--Sobic002G014400 Sobic005G163700--Sobic004G047200 Sobic005G163700--Sobic004G215700 Sobic005G163700--Sobic004G326600 Sobic005G163700--Sobic001G467100 Sobic004G208500 Sobic004G208500 Sobic005G163700--Sobic004G208500 Sobic002G412700 Sobic002G412700 Sobic005G163700--Sobic002G412700 Sobic006G024700--Sobic004G215700 Sobic004G034300 Sobic004G034300 Sobic006G024700--Sobic004G034300 Sobic006G024700--Sobic002G423500 Sobic006G024700--Sobic003G388900 Sobic006G024700--Sobic001G460500 Sobic006G024700--Sobic005G163700 Sobic009G041800 Sobic009G041800 Sobic006G024700--Sobic009G041800 Sobic006G024700--Sobic004G212100 Sobic004G336300 Sobic004G336300 Sobic006G024700--Sobic004G336300 Sobic004G047200--Sobic004G326600 Sobic004G047200--Sobic002G423500 Sobic004G047200--Sobic002G014400 Sobic001G008500 Sobic001G008500 Sobic004G047200--Sobic001G008500 Sobic004G047200--Sobic005G163700 Sobic001G530800 Sobic001G530800 Sobic004G047200--Sobic001G530800 Sobic004G047200--Sobic004G215700 Sobic004G047200--Sobic001G460500 Sobic001G371100 Sobic001G371100 Sobic004G047200--Sobic001G371100 Sobic001G460500--Sobic005G163700 Sobic001G460500--Sobic002G423500 Sobic001G460500--Sobic002G014400 Sobic001G460500--Sobic004G208500 Sobic010G081700 Sobic010G081700 Sobic001G460500--Sobic010G081700 Sobic001G460500--Sobic004G047200 Sobic001G460500--Sobic002G412700 Sobic001G251600 Sobic001G251600 Sobic001G460500--Sobic001G251600 Sobic003G099300 Sobic003G099300 Sobic001G460500--Sobic003G099300 Sobic003G008600--Sobic001G008500 Sobic001G115500 Sobic001G115500 Sobic003G008600--Sobic001G115500 Sobic003G008600--Sobic002G423500 Sobic002G365900 Sobic002G365900 Sobic003G008600--Sobic002G365900 Sobic002G208400 Sobic002G208400 Sobic003G008600--Sobic002G208400 Sobic003G008600--Sobic004G215700 Sobic003G008600--Sobic001G460500 Sobic004G075200 Sobic004G075200 Sobic003G008600--Sobic004G075200 Sobic003G130000 Sobic003G130000 Sobic003G008600--Sobic003G130000 Sobic002G367800 Sobic002G367800 Sobic003G388900--Sobic002G367800 Sobic002G402500 Sobic002G402500 Sobic003G388900--Sobic002G402500 Sobic003G388900--Sobic001G522000 Sobic003G202100 Sobic003G202100 Sobic003G388900--Sobic003G202100 Sobic003G388900--Sobic004G212100 Sobic001G304000 Sobic001G304000 Sobic003G388900--Sobic001G304000 Sobic002G295900 Sobic002G295900 Sobic003G388900--Sobic002G295900 Sobic001G413100 Sobic001G413100 Sobic003G388900--Sobic001G413100 Sobic003G205400 Sobic003G205400 Sobic003G388900--Sobic003G205400 Sobic004G212100--Sobic002G367800 Sobic001G011000 Sobic001G011000 Sobic004G212100--Sobic001G011000 Sobic004G212100--Sobic009G041800 Sobic004G212100--Sobic003G388900 Sobic002G070300 Sobic002G070300 Sobic004G212100--Sobic002G070300 Sobic001G161700 Sobic001G161700 Sobic004G212100--Sobic001G161700 Sobic004G212100--Sobic004G034300 Sobic004G212100--Sobic001G522000 Sobic001G490500 Sobic001G490500 Sobic004G212100--Sobic001G490500
Octagon: transcription factors


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