Gene annotation
Transcriptome id Sobic.002G014400.1
Synonym Sb02g001450
Functional annotation T-complex protein, putative, expressed
UniProt C5X7Z0
Pfam PF00118
Panther DB PTHR11353
NCBI CDD -
KEGG Orthology K09497; T-complex protein 1 subunit epsilon
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT1G24510 : TCP-1/cpn60 chaperonin family protein
RAP-DB (Rice) LOC_Os06g36700.1 : T-complex protein, putative, expressed
MaizeGDB (Corn) Zm00025a016223 , Zm00025a044918
Brachypodium KQJ97872 , KQK17964
Barley HORVU1Hr1G054530.18 , HORVU1Hr1G054530.19 , HORVU1Hr1G054530.10 , HORVU1Hr1G054530.11 , HORVU1Hr1G054530.12 , HORVU1Hr1G054530.13 , HORVU1Hr1G054530.14 , HORVU1Hr1G054530.16 , HORVU1Hr1G054530.29 , HORVU1Hr1G054530.28 , HORVU1Hr1G054530.25 , HORVU1Hr1G054530.24 , HORVU1Hr1G054530.27 , HORVU1Hr1G054530.26 , HORVU1Hr1G054530.21 , HORVU1Hr1G054530.20 , HORVU1Hr1G054530.23 , HORVU1Hr1G054530.22 , HORVU1Hr1G054530.8 , HORVU1Hr1G054530.9 , HORVU1Hr1G054530.2 , HORVU1Hr1G054530.3 , HORVU1Hr1G054530.1 , HORVU1Hr1G054530.6 , HORVU1Hr1G054530.7 , HORVU1Hr1G054530.4 , HORVU1Hr1G054530.5 , HORVU1Hr1G054530.15 , HORVU7Hr1G088080.1 , HORVU1Hr1G054530.17
Wheat TraesCS1B02G227600 , TraesCS7B02G269300 , TraesCS7B02G269300 , TraesCS7B02G269300 , TraesCS7D02G364400 , TraesCS7A02G358400 , TraesCS7D02G364400 , TraesCS1D02G216600 , TraesCS1A02G213800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G014400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
2 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
3 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
4 Sobic.005G163700 T-complex protein, putative, expressed K09500: T-complex protein 1 subunit theta
5 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
6 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
7 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7
8 Sobic.006G044600 eukaryotic translation initiation factor 3 subunit H, putative, expressed K03247: translation initiation factor 3 subunit H
9 Sobic.001G251600 SET domain protein 123, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
10 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
11 Sobic.009G231700 GTP binding protein, putative, expressed -
12 Sobic.007G177300 kinetochore protein, putative, expressed K11547: NDC80, HEC1, kinetochore protein NDC80
13 Sobic.004G252000 expressed protein K14545: ribosomal RNA-processing protein 7
14 Sobic.001G193500 DnaK family protein, putative, expressed K04043: dnaK, molecular chaperone DnaK
15 Sobic.006G056600 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
16 Sobic.009G226400 dynamin family protein, putative, expressed -
17 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
18 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
19 Sobic.007G162800 expressed protein -
20 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M


Gene co-expression network
sample Sobic002G014400 Sobic002G014400 Sobic004G047200 Sobic004G047200 Sobic002G014400--Sobic004G047200 Sobic004G326600 Sobic004G326600 Sobic002G014400--Sobic004G326600 Sobic002G423500 Sobic002G423500 Sobic002G014400--Sobic002G423500 Sobic005G163700 Sobic005G163700 Sobic002G014400--Sobic005G163700 Sobic002G341800 Sobic002G341800 Sobic002G014400--Sobic002G341800 Sobic001G460500 Sobic001G460500 Sobic002G014400--Sobic001G460500 Sobic002G394600 Sobic002G394600 Sobic002G014400--Sobic002G394600 Sobic006G044600 Sobic006G044600 Sobic002G014400--Sobic006G044600 Sobic001G251600 Sobic001G251600 Sobic002G014400--Sobic001G251600 Sobic004G047200--Sobic004G326600 Sobic004G047200--Sobic002G423500 Sobic004G047200--Sobic002G014400 Sobic001G008500 Sobic001G008500 Sobic004G047200--Sobic001G008500 Sobic004G047200--Sobic005G163700 Sobic001G530800 Sobic001G530800 Sobic004G047200--Sobic001G530800 Sobic004G215700 Sobic004G215700 Sobic004G047200--Sobic004G215700 Sobic004G047200--Sobic001G460500 Sobic001G371100 Sobic001G371100 Sobic004G047200--Sobic001G371100 Sobic004G326600--Sobic004G047200 Sobic004G326600--Sobic002G014400 Sobic004G326600--Sobic002G423500 Sobic001G091900 Sobic001G091900 Sobic004G326600--Sobic001G091900 Sobic004G326600--Sobic004G215700 Sobic004G326600--Sobic002G341800 Sobic004G326600--Sobic005G163700 Sobic002G143000 Sobic002G143000 Sobic004G326600--Sobic002G143000 Sobic001G458700 Sobic001G458700 Sobic004G326600--Sobic001G458700 Sobic002G423500--Sobic005G163700 Sobic002G423500--Sobic004G047200 Sobic002G423500--Sobic002G014400 Sobic002G423500--Sobic001G460500 Sobic002G423500--Sobic004G326600 Sobic002G423500--Sobic004G215700 Sobic001G522000 Sobic001G522000 Sobic002G423500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G423500--Sobic006G041100 Sobic001G467100 Sobic001G467100 Sobic002G423500--Sobic001G467100 Sobic005G163700--Sobic001G460500 Sobic005G163700--Sobic002G423500 Sobic005G163700--Sobic002G014400 Sobic005G163700--Sobic004G047200 Sobic005G163700--Sobic004G215700 Sobic005G163700--Sobic004G326600 Sobic005G163700--Sobic001G467100 Sobic004G208500 Sobic004G208500 Sobic005G163700--Sobic004G208500 Sobic002G412700 Sobic002G412700 Sobic005G163700--Sobic002G412700 Sobic002G341800--Sobic001G458700 Sobic001G404100 Sobic001G404100 Sobic002G341800--Sobic001G404100 Sobic001G481700 Sobic001G481700 Sobic002G341800--Sobic001G481700 Sobic007G176200 Sobic007G176200 Sobic002G341800--Sobic007G176200 Sobic002G341800--Sobic006G044600 Sobic002G341800--Sobic002G394600 Sobic005G105500 Sobic005G105500 Sobic002G341800--Sobic005G105500 Sobic008G137600 Sobic008G137600 Sobic002G341800--Sobic008G137600 Sobic004G081800 Sobic004G081800 Sobic002G341800--Sobic004G081800 Sobic001G460500--Sobic005G163700 Sobic001G460500--Sobic002G423500 Sobic001G460500--Sobic002G014400 Sobic001G460500--Sobic004G208500 Sobic010G081700 Sobic010G081700 Sobic001G460500--Sobic010G081700 Sobic001G460500--Sobic004G047200 Sobic001G460500--Sobic002G412700 Sobic001G460500--Sobic001G251600 Sobic003G099300 Sobic003G099300 Sobic001G460500--Sobic003G099300 Sobic002G394600--Sobic002G341800 Sobic002G394600--Sobic006G044600 Sobic002G394600--Sobic002G014400 Sobic002G394600--Sobic001G251600 Sobic009G190300 Sobic009G190300 Sobic002G394600--Sobic009G190300 Sobic004G194900 Sobic004G194900 Sobic002G394600--Sobic004G194900 Sobic002G394600--Sobic001G404100 Sobic007G177300 Sobic007G177300 Sobic002G394600--Sobic007G177300 Sobic004G310500 Sobic004G310500 Sobic002G394600--Sobic004G310500 Sobic006G044600--Sobic002G341800 Sobic006G044600--Sobic004G194900 Sobic006G044600--Sobic002G394600 Sobic007G184500 Sobic007G184500 Sobic006G044600--Sobic007G184500 Sobic007G166400 Sobic007G166400 Sobic006G044600--Sobic007G166400 Sobic006G044600--Sobic001G458700 Sobic002G077900 Sobic002G077900 Sobic006G044600--Sobic002G077900 Sobic009G058500 Sobic009G058500 Sobic006G044600--Sobic009G058500 Sobic008G055900 Sobic008G055900 Sobic006G044600--Sobic008G055900 Sobic006G010400 Sobic006G010400 Sobic001G251600--Sobic006G010400 Sobic001G251600--Sobic002G423500 SobicK004100 SobicK004100 Sobic001G251600--SobicK004100 Sobic001G251600--Sobic004G208500 Sobic001G145400 Sobic001G145400 Sobic001G251600--Sobic001G145400 Sobic009G249800 Sobic009G249800 Sobic001G251600--Sobic009G249800 Sobic002G408900 Sobic002G408900 Sobic001G251600--Sobic002G408900 Sobic001G251600--Sobic002G394600 Sobic001G251600--Sobic002G412700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.