Gene annotation
Transcriptome id Sobic.001G458700.1,Sobic.001G458700.2
Synonym Sb01g043050, RPT3
Functional annotation 26S protease regulatory subunit 6B, putative, expressed
UniProt A0A1B6QPQ3 , A0A1B6QPP4
Pfam PF00004 PF07728
Panther DB PTHR23073 PTHR23073:SF8
NCBI CDD -
KEGG Orthology K03063; PSMC4, 26S proteasome regulatory subunit T3
Gene Ontology GO:0005524; ATP binding GO:0016887ATPase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT5G58290 : regulatory particle triple-A ATPase 3
RAP-DB (Rice) LOC_Os02g21970.1 : 26S protease regulatory subunit 6B, putative, expressed
MaizeGDB (Corn) Zm00025a031420 , Zm00025a019679
Brachypodium KQJ94469 , KQJ90240
Barley HORVU3Hr1G037270.1 , HORVU3Hr1G037270.2 , HORVU3Hr1G037270.3 , HORVU4Hr1G054820.9 , HORVU2Hr1G107280.1 , HORVU2Hr1G107280.2 , HORVU2Hr1G107280.3 , HORVU2Hr1G014000.1 , HORVU1Hr1G079960.4 , HORVU1Hr1G079960.1 , HORVU1Hr1G079960.2 , HORVU1Hr1G079960.3 , HORVU3Hr1G067470.3 , HORVU3Hr1G067470.2 , HORVU3Hr1G067470.1 , HORVU3Hr1G067470.6 , HORVU3Hr1G067470.5 , HORVU2Hr1G087740.1
Wheat TraesCS2B02G100400 , TraesCS2D02G083900 , TraesCS2D02G476000 , TraesCS2B02G499600 , TraesCS2A02G086400 , TraesCS2A02G475900 , TraesCS2A02G475900
Populus -


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cDNA sequences
Sobic.001G458700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
2 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
3 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
4 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
5 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
6 Sobic.003G330500 peptidase, T1 family, putative, expressed -
7 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
8 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
9 Sobic.004G081800 Ubiquitin family domain containing protein, expressed K11885: DNA damage-inducible protein 1
10 Sobic.003G261400 DUF292 domain containing protein, expressed -
11 Sobic.007G142500 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
12 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
13 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
14 Sobic.005G105500 expressed protein -
15 Sobic.007G045600 MSP domain containing protein, expressed -
16 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
17 Sobic.009G067000 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
18 Sobic.004G082900 26S protease regulatory subunit, putative, expressed K03064: PSMC6, 26S proteasome regulatory subunit T4
19 Sobic.001G281900 miro, putative, expressed K07977: Arf/Sar family, other
20 Sobic.004G010900 OsFBK2 - F-box domain and kelch repeat containing protein, expressed -


Gene co-expression network
sample Sobic001G458700 Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G458700--Sobic007G176200 Sobic006G252200 Sobic006G252200 Sobic001G458700--Sobic006G252200 Sobic001G010700 Sobic001G010700 Sobic001G458700--Sobic001G010700 Sobic002G341800 Sobic002G341800 Sobic001G458700--Sobic002G341800 Sobic004G224900 Sobic004G224900 Sobic001G458700--Sobic004G224900 Sobic003G330500 Sobic003G330500 Sobic001G458700--Sobic003G330500 Sobic001G283200 Sobic001G283200 Sobic001G458700--Sobic001G283200 Sobic001G502200 Sobic001G502200 Sobic001G458700--Sobic001G502200 Sobic004G081800 Sobic004G081800 Sobic001G458700--Sobic004G081800 Sobic007G176200--Sobic001G458700 Sobic007G176200--Sobic001G010700 Sobic007G176200--Sobic006G252200 Sobic007G176200--Sobic003G330500 Sobic007G176200--Sobic004G224900 Sobic002G428200 Sobic002G428200 Sobic007G176200--Sobic002G428200 Sobic004G335000 Sobic004G335000 Sobic007G176200--Sobic004G335000 Sobic007G176200--Sobic002G341800 Sobic009G067000 Sobic009G067000 Sobic007G176200--Sobic009G067000 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic006G252200--Sobic004G224900 Sobic006G252200--Sobic001G010700 Sobic006G252200--Sobic003G330500 Sobic006G252200--Sobic002G428200 Sobic004G138800 Sobic004G138800 Sobic006G252200--Sobic004G138800 Sobic006G252200--Sobic001G283200 Sobic001G096100 Sobic001G096100 Sobic006G252200--Sobic001G096100 Sobic001G010700--Sobic007G176200 Sobic001G010700--Sobic006G252200 Sobic001G010700--Sobic001G458700 Sobic001G010700--Sobic003G330500 Sobic001G010700--Sobic004G335000 Sobic001G010700--Sobic002G428200 Sobic001G010700--Sobic004G224900 Sobic003G043400 Sobic003G043400 Sobic001G010700--Sobic003G043400 Sobic002G423800 Sobic002G423800 Sobic001G010700--Sobic002G423800 Sobic002G341800--Sobic001G458700 Sobic001G404100 Sobic001G404100 Sobic002G341800--Sobic001G404100 Sobic001G481700 Sobic001G481700 Sobic002G341800--Sobic001G481700 Sobic002G341800--Sobic007G176200 Sobic006G044600 Sobic006G044600 Sobic002G341800--Sobic006G044600 Sobic002G394600 Sobic002G394600 Sobic002G341800--Sobic002G394600 Sobic005G105500 Sobic005G105500 Sobic002G341800--Sobic005G105500 Sobic008G137600 Sobic008G137600 Sobic002G341800--Sobic008G137600 Sobic002G341800--Sobic004G081800 Sobic004G224900--Sobic003G330500 Sobic004G224900--Sobic006G252200 Sobic004G224900--Sobic007G176200 Sobic004G224900--Sobic004G138800 Sobic007G076300 Sobic007G076300 Sobic004G224900--Sobic007G076300 Sobic004G224900--Sobic001G481700 Sobic004G224900--Sobic001G502200 Sobic004G224900--Sobic001G458700 Sobic001G236300 Sobic001G236300 Sobic004G224900--Sobic001G236300 Sobic003G330500--Sobic004G224900 Sobic003G330500--Sobic007G176200 Sobic003G330500--Sobic007G076300 Sobic003G330500--Sobic006G252200 Sobic003G330500--Sobic001G458700 Sobic003G330500--Sobic001G010700 Sobic003G330500--Sobic001G502200 Sobic003G330500--Sobic004G138800 Sobic003G330500--Sobic001G096100 Sobic001G283200--Sobic001G458700 Sobic003G261400 Sobic003G261400 Sobic001G283200--Sobic003G261400 Sobic001G283200--Sobic006G252200 Sobic001G033500 Sobic001G033500 Sobic001G283200--Sobic001G033500 Sobic004G348900 Sobic004G348900 Sobic001G283200--Sobic004G348900 Sobic004G181900 Sobic004G181900 Sobic001G283200--Sobic004G181900 Sobic003G349300 Sobic003G349300 Sobic001G283200--Sobic003G349300 Sobic001G283200--Sobic007G176200 Sobic004G082900 Sobic004G082900 Sobic001G283200--Sobic004G082900 Sobic001G315500 Sobic001G315500 Sobic001G502200--Sobic001G315500 Sobic007G168600 Sobic007G168600 Sobic001G502200--Sobic007G168600 Sobic001G502200--Sobic004G224900 Sobic003G124800 Sobic003G124800 Sobic001G502200--Sobic003G124800 Sobic001G502200--Sobic001G458700 Sobic001G502200--Sobic003G330500 Sobic001G502200--Sobic002G428200 Sobic002G078400 Sobic002G078400 Sobic001G502200--Sobic002G078400 Sobic001G502200--Sobic006G252200 Sobic004G081800--Sobic001G458700 Sobic004G081800--Sobic003G261400 Sobic004G081800--Sobic002G341800 Sobic004G081800--Sobic004G224900 Sobic004G081800--Sobic007G176200 Sobic004G081800--Sobic001G502200 Sobic004G081800--Sobic001G010700 Sobic004G081800--Sobic007G168600 Sobic004G081800--Sobic006G252200
Octagon: transcription factors


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