Gene annotation
Transcriptome id Sobic.004G082900.1
Synonym Sb04g006830
Functional annotation 26S protease regulatory subunit, putative, expressed
UniProt C5XXK3
Pfam PF05496
Panther DB PTHR23073 PTHR23073:SF32
NCBI CDD -
KEGG Orthology K03064; PSMC6, 26S proteasome regulatory subunit T4
Gene Ontology GO:0009378; four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT1G45000 : AAA-type ATPase family protein
RAP-DB (Rice) LOC_Os02g10640.1 : 26S protease regulatory subunit, putative, expressed
MaizeGDB (Corn) Zm00025a019575 , Zm00025a034639
Brachypodium KQJ93902
Barley -
Wheat TraesCS6D02G149500 , TraesCS6D02G149500 , TraesCS7B02G280400
Populus -


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cDNA sequences
Sobic.004G082900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
2 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
3 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
4 Sobic.004G010900 OsFBK2 - F-box domain and kelch repeat containing protein, expressed -
5 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
6 Sobic.005G105500 expressed protein -
7 Sobic.001G145500 trafficking protein particle complex subunit 1, putative, expressed -
8 Sobic.009G149500 coiled-coil domain-containing protein 47 precursor, putative, expressed -
9 Sobic.001G444300 expressed protein -
10 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
11 Sobic.007G079300 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
12 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
13 Sobic.002G071000 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
14 Sobic.001G338400 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
15 Sobic.003G186700 ubiquitin carboxyl-terminal hydrolase 6, putative, expressed K11843: USP14, ubiquitin carboxyl-terminal hydrolase 14
16 Sobic.001G281900 miro, putative, expressed K07977: Arf/Sar family, other
17 Sobic.004G081800 Ubiquitin family domain containing protein, expressed K11885: DNA damage-inducible protein 1
18 Sobic.006G002201 - -
19 Sobic.010G205300 secreted salivary protein, putative, expressed -
20 Sobic.009G067000 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4


Gene co-expression network
sample Sobic004G082900 Sobic004G082900 Sobic006G252200 Sobic006G252200 Sobic004G082900--Sobic006G252200 Sobic001G283200 Sobic001G283200 Sobic004G082900--Sobic001G283200 Sobic001G458700 Sobic001G458700 Sobic004G082900--Sobic001G458700 Sobic004G010900 Sobic004G010900 Sobic004G082900--Sobic004G010900 Sobic007G176200 Sobic007G176200 Sobic004G082900--Sobic007G176200 Sobic005G105500 Sobic005G105500 Sobic004G082900--Sobic005G105500 Sobic001G145500 Sobic001G145500 Sobic004G082900--Sobic001G145500 Sobic009G149500 Sobic009G149500 Sobic004G082900--Sobic009G149500 Sobic001G444300 Sobic001G444300 Sobic004G082900--Sobic001G444300 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic004G224900 Sobic004G224900 Sobic006G252200--Sobic004G224900 Sobic001G010700 Sobic001G010700 Sobic006G252200--Sobic001G010700 Sobic003G330500 Sobic003G330500 Sobic006G252200--Sobic003G330500 Sobic002G428200 Sobic002G428200 Sobic006G252200--Sobic002G428200 Sobic004G138800 Sobic004G138800 Sobic006G252200--Sobic004G138800 Sobic006G252200--Sobic001G283200 Sobic001G096100 Sobic001G096100 Sobic006G252200--Sobic001G096100 Sobic001G283200--Sobic001G458700 Sobic003G261400 Sobic003G261400 Sobic001G283200--Sobic003G261400 Sobic001G283200--Sobic006G252200 Sobic001G033500 Sobic001G033500 Sobic001G283200--Sobic001G033500 Sobic004G348900 Sobic004G348900 Sobic001G283200--Sobic004G348900 Sobic004G181900 Sobic004G181900 Sobic001G283200--Sobic004G181900 Sobic003G349300 Sobic003G349300 Sobic001G283200--Sobic003G349300 Sobic001G283200--Sobic007G176200 Sobic001G283200--Sobic004G082900 Sobic001G458700--Sobic007G176200 Sobic001G458700--Sobic006G252200 Sobic001G458700--Sobic001G010700 Sobic002G341800 Sobic002G341800 Sobic001G458700--Sobic002G341800 Sobic001G458700--Sobic004G224900 Sobic001G458700--Sobic003G330500 Sobic001G458700--Sobic001G283200 Sobic001G502200 Sobic001G502200 Sobic001G458700--Sobic001G502200 Sobic004G081800 Sobic004G081800 Sobic001G458700--Sobic004G081800 Sobic001G206900 Sobic001G206900 Sobic004G010900--Sobic001G206900 Sobic004G010900--Sobic001G458700 Sobic004G010900--Sobic004G082900 Sobic004G010900--Sobic006G252200 Sobic010G205300 Sobic010G205300 Sobic004G010900--Sobic010G205300 Sobic004G010900--Sobic003G261400 Sobic001G338400 Sobic001G338400 Sobic004G010900--Sobic001G338400 Sobic004G010900--Sobic001G283200 Sobic004G010900--Sobic003G349300 Sobic007G176200--Sobic001G458700 Sobic007G176200--Sobic001G010700 Sobic007G176200--Sobic006G252200 Sobic007G176200--Sobic003G330500 Sobic007G176200--Sobic004G224900 Sobic007G176200--Sobic002G428200 Sobic004G335000 Sobic004G335000 Sobic007G176200--Sobic004G335000 Sobic007G176200--Sobic002G341800 Sobic009G067000 Sobic009G067000 Sobic007G176200--Sobic009G067000 Sobic001G281900 Sobic001G281900 Sobic005G105500--Sobic001G281900 Sobic005G105500--Sobic001G458700 Sobic005G105500--Sobic002G341800 Sobic005G105500--Sobic001G145500 Sobic005G105500--Sobic001G096100 Sobic006G211800 Sobic006G211800 Sobic005G105500--Sobic006G211800 Sobic005G105500--Sobic007G176200 Sobic005G105500--Sobic003G330500 Sobic006G002201 Sobic006G002201 Sobic005G105500--Sobic006G002201 Sobic001G145500--Sobic001G444300 Sobic001G145500--Sobic005G105500 Sobic001G145500--Sobic001G338400 Sobic001G145500--Sobic001G281900 Sobic001G145500--Sobic007G176200 Sobic001G145500--Sobic004G010900 Sobic001G145500--Sobic006G252200 Sobic001G145500--Sobic003G330500 Sobic002G029300 Sobic002G029300 Sobic001G145500--Sobic002G029300 Sobic009G149500--Sobic001G206900 Sobic010G020400 Sobic010G020400 Sobic009G149500--Sobic010G020400 Sobic007G188300 Sobic007G188300 Sobic009G149500--Sobic007G188300 Sobic010G223300 Sobic010G223300 Sobic009G149500--Sobic010G223300 Sobic001G014800 Sobic001G014800 Sobic009G149500--Sobic001G014800 Sobic009G192000 Sobic009G192000 Sobic009G149500--Sobic009G192000 Sobic009G149500--Sobic004G181900 Sobic009G149500--Sobic004G010900 Sobic003G338500 Sobic003G338500 Sobic009G149500--Sobic003G338500 Sobic001G444300--Sobic001G145500 Sobic006G109700 Sobic006G109700 Sobic001G444300--Sobic006G109700 Sobic002G423800 Sobic002G423800 Sobic001G444300--Sobic002G423800 Sobic001G444300--Sobic006G211800 Sobic001G444300--Sobic007G176200 Sobic001G444300--Sobic006G252200 Sobic001G444300--Sobic002G428200 Sobic003G104700 Sobic003G104700 Sobic001G444300--Sobic003G104700 Sobic001G444300--Sobic004G348900
Octagon: transcription factors


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