Gene annotation
Transcriptome id Sobic.001G281900.1
Synonym ATARFB1B, Sb01g027720, ARFB1B
Functional annotation miro, putative, expressed
UniProt C5WQM0
Pfam PF08477
Panther DB PTHR11711 PTHR11711:SF168
NCBI CDD KOG0070; GTP-binding ADP-ribosylation factor Arf1
KEGG Orthology K07977; Arf/Sar family, other
Gene Ontology GO:0007264; small GTPase mediated signal transduction GO:0005525GTP binding


Orthologs (automatic annotation)
TAIR AT5G17060 : ADP-ribosylation factor B1B
RAP-DB (Rice) LOC_Os10g42940.1 : miro, putative, expressed
MaizeGDB (Corn) Zm00025a003586 , Zm00025a021658 , Zm00025a041553 , Zm00025a032411
Brachypodium PNT67159
Barley HORVU1Hr1G051350.5 , HORVU1Hr1G051350.4 , HORVU1Hr1G051350.7 , HORVU1Hr1G051350.6 , HORVU1Hr1G051350.1 , HORVU1Hr1G051350.3 , HORVU1Hr1G051350.2 , HORVU1Hr1G051350.8
Wheat TraesCS1D02G201300 , TraesCS1A02G197800 , TraesCS1B02G212500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G330500 peptidase, T1 family, putative, expressed -
2 Sobic.005G105500 expressed protein -
3 Sobic.008G150300 Lg106, putative, expressed -
4 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
5 Sobic.001G196100 src homology-3 domain protein 3, putative, expressed -
6 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
7 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
8 Sobic.001G338400 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
9 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
10 Sobic.001G145500 trafficking protein particle complex subunit 1, putative, expressed -
11 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
12 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
13 Sobic.001G220900 adaptin ear-binding coat-associated protein 2, putative, expressed -
14 Sobic.001G444300 expressed protein -
15 Sobic.003G348800 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
16 Sobic.004G282700 synthase, putative, expressed K12451: 3,5-epimerase/4-reductase
17 Sobic.008G129300 CPuORF5 - conserved peptide uORF-containing transcript, expressed -
18 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
19 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
20 Sobic.001G109300 adenylyl cyclase-associated protein, putative, expressed K17261: CAP1_2, adenylyl cyclase-associated protein


Gene co-expression network
sample Sobic001G281900 Sobic001G281900 Sobic003G330500 Sobic003G330500 Sobic001G281900--Sobic003G330500 Sobic005G105500 Sobic005G105500 Sobic001G281900--Sobic005G105500 Sobic008G150300 Sobic008G150300 Sobic001G281900--Sobic008G150300 Sobic006G252200 Sobic006G252200 Sobic001G281900--Sobic006G252200 Sobic001G196100 Sobic001G196100 Sobic001G281900--Sobic001G196100 Sobic001G458700 Sobic001G458700 Sobic001G281900--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G281900--Sobic007G176200 Sobic001G338400 Sobic001G338400 Sobic001G281900--Sobic001G338400 Sobic001G096100 Sobic001G096100 Sobic001G281900--Sobic001G096100 Sobic004G224900 Sobic004G224900 Sobic003G330500--Sobic004G224900 Sobic003G330500--Sobic007G176200 Sobic007G076300 Sobic007G076300 Sobic003G330500--Sobic007G076300 Sobic003G330500--Sobic006G252200 Sobic003G330500--Sobic001G458700 Sobic001G010700 Sobic001G010700 Sobic003G330500--Sobic001G010700 Sobic001G502200 Sobic001G502200 Sobic003G330500--Sobic001G502200 Sobic004G138800 Sobic004G138800 Sobic003G330500--Sobic004G138800 Sobic003G330500--Sobic001G096100 Sobic005G105500--Sobic001G281900 Sobic005G105500--Sobic001G458700 Sobic002G341800 Sobic002G341800 Sobic005G105500--Sobic002G341800 Sobic001G145500 Sobic001G145500 Sobic005G105500--Sobic001G145500 Sobic005G105500--Sobic001G096100 Sobic006G211800 Sobic006G211800 Sobic005G105500--Sobic006G211800 Sobic005G105500--Sobic007G176200 Sobic005G105500--Sobic003G330500 Sobic006G002201 Sobic006G002201 Sobic005G105500--Sobic006G002201 Sobic003G170300 Sobic003G170300 Sobic008G150300--Sobic003G170300 Sobic008G150300--Sobic001G281900 Sobic008G150300--Sobic001G338400 Sobic001G458800 Sobic001G458800 Sobic008G150300--Sobic001G458800 Sobic007G161200 Sobic007G161200 Sobic008G150300--Sobic007G161200 Sobic002G410700 Sobic002G410700 Sobic008G150300--Sobic002G410700 Sobic008G150300--Sobic005G105500 Sobic007G159700 Sobic007G159700 Sobic008G150300--Sobic007G159700 Sobic008G150300--Sobic006G211800 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic006G252200--Sobic004G224900 Sobic006G252200--Sobic001G010700 Sobic006G252200--Sobic003G330500 Sobic002G428200 Sobic002G428200 Sobic006G252200--Sobic002G428200 Sobic006G252200--Sobic004G138800 Sobic001G283200 Sobic001G283200 Sobic006G252200--Sobic001G283200 Sobic006G252200--Sobic001G096100 Sobic001G116000 Sobic001G116000 Sobic001G196100--Sobic001G116000 Sobic007G044400 Sobic007G044400 Sobic001G196100--Sobic007G044400 Sobic001G196100--Sobic001G281900 Sobic001G035400 Sobic001G035400 Sobic001G196100--Sobic001G035400 Sobic001G418000 Sobic001G418000 Sobic001G196100--Sobic001G418000 Sobic002G087000 Sobic002G087000 Sobic001G196100--Sobic002G087000 Sobic003G319000 Sobic003G319000 Sobic001G196100--Sobic003G319000 Sobic003G322300 Sobic003G322300 Sobic001G196100--Sobic003G322300 Sobic001G530800 Sobic001G530800 Sobic001G196100--Sobic001G530800 Sobic001G458700--Sobic007G176200 Sobic001G458700--Sobic006G252200 Sobic001G458700--Sobic001G010700 Sobic001G458700--Sobic002G341800 Sobic001G458700--Sobic004G224900 Sobic001G458700--Sobic003G330500 Sobic001G458700--Sobic001G283200 Sobic001G458700--Sobic001G502200 Sobic004G081800 Sobic004G081800 Sobic001G458700--Sobic004G081800 Sobic007G176200--Sobic001G458700 Sobic007G176200--Sobic001G010700 Sobic007G176200--Sobic006G252200 Sobic007G176200--Sobic003G330500 Sobic007G176200--Sobic004G224900 Sobic007G176200--Sobic002G428200 Sobic004G335000 Sobic004G335000 Sobic007G176200--Sobic004G335000 Sobic007G176200--Sobic002G341800 Sobic009G067000 Sobic009G067000 Sobic007G176200--Sobic009G067000 Sobic003G348800 Sobic003G348800 Sobic001G338400--Sobic003G348800 Sobic001G338400--Sobic008G150300 Sobic001G338400--Sobic001G281900 Sobic001G338400--Sobic001G145500 Sobic004G010900 Sobic004G010900 Sobic001G338400--Sobic004G010900 Sobic001G490500 Sobic001G490500 Sobic001G338400--Sobic001G490500 Sobic001G230100 Sobic001G230100 Sobic001G338400--Sobic001G230100 Sobic002G342500 Sobic002G342500 Sobic001G338400--Sobic002G342500 Sobic006G029000 Sobic006G029000 Sobic001G338400--Sobic006G029000 Sobic004G066800 Sobic004G066800 Sobic001G096100--Sobic004G066800 Sobic001G096100--Sobic004G138800 Sobic001G096100--Sobic003G330500 Sobic001G096100--Sobic006G252200 Sobic001G096100--Sobic004G224900 Sobic002G255100 Sobic002G255100 Sobic001G096100--Sobic002G255100 Sobic001G481700 Sobic001G481700 Sobic001G096100--Sobic001G481700 Sobic003G196800 Sobic003G196800 Sobic001G096100--Sobic003G196800 Sobic010G038700 Sobic010G038700 Sobic001G096100--Sobic010G038700
Octagon: transcription factors


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