Gene annotation
Transcriptome id Sobic.001G444300.1
Synonym Sb01g041750
Functional annotation expressed protein
UniProt A0A109NDN9 , A0A109NDV5 , A0A109NDK8 , C5WRN3
Pfam PF08513 PF10607
Panther DB PTHR12864
NCBI CDD KOG2659; LisH motif-containing protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G61150 : LisH and RanBPM domains containing protein
RAP-DB (Rice) LOC_Os03g13220.1 : expressed protein
MaizeGDB (Corn) Zm00025a052952 , Zm00025a001466
Brachypodium KQK22704 , KQK22702 , KQK22703
Barley HORVU3Hr1G003020.2 , HORVU3Hr1G003020.3 , HORVU3Hr1G003020.1 , HORVU3Hr1G003020.6 , HORVU3Hr1G003020.7 , HORVU3Hr1G003020.4 , HORVU3Hr1G003020.5 , HORVU3Hr1G003020.8 , HORVU3Hr1G003020.9 , HORVU4Hr1G064860.1 , HORVU3Hr1G003020.10
Wheat TraesCS4A02G076400 , TraesCS4D02G233600 , TraesCS3D02G023500 , TraesCS3A02G022800 , TraesCS4B02G232300 , TraesCS3B02G022300
Populus -


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cDNA sequences
Sobic.001G444300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G145500 trafficking protein particle complex subunit 1, putative, expressed -
2 Sobic.006G109700 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
3 Sobic.002G423800 trafficking protein particle complex subunit, putative, expressed -
4 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
5 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
6 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
7 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
8 Sobic.003G104700 Rer1 protein, putative, expressed -
9 Sobic.004G348900 expressed protein -
10 Sobic.008G145100 glycosyl transferase, group 1 domain containing protein, expressed K03844: alpha-1,2-mannosyltransferase
11 Sobic.001G542900 uncharacterized Cys-rich domain containing protein, putative, expressed -
12 Sobic.003G330500 peptidase, T1 family, putative, expressed -
13 Sobic.005G105500 expressed protein -
14 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
15 Sobic.001G281900 miro, putative, expressed K07977: Arf/Sar family, other
16 Sobic.004G082900 26S protease regulatory subunit, putative, expressed K03064: PSMC6, 26S proteasome regulatory subunit T4
17 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
18 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
19 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
20 Sobic.007G079300 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2


Gene co-expression network
sample Sobic001G444300 Sobic001G444300 Sobic001G145500 Sobic001G145500 Sobic001G444300--Sobic001G145500 Sobic006G109700 Sobic006G109700 Sobic001G444300--Sobic006G109700 Sobic002G423800 Sobic002G423800 Sobic001G444300--Sobic002G423800 Sobic006G211800 Sobic006G211800 Sobic001G444300--Sobic006G211800 Sobic007G176200 Sobic007G176200 Sobic001G444300--Sobic007G176200 Sobic006G252200 Sobic006G252200 Sobic001G444300--Sobic006G252200 Sobic002G428200 Sobic002G428200 Sobic001G444300--Sobic002G428200 Sobic003G104700 Sobic003G104700 Sobic001G444300--Sobic003G104700 Sobic004G348900 Sobic004G348900 Sobic001G444300--Sobic004G348900 Sobic001G145500--Sobic001G444300 Sobic005G105500 Sobic005G105500 Sobic001G145500--Sobic005G105500 Sobic001G338400 Sobic001G338400 Sobic001G145500--Sobic001G338400 Sobic001G281900 Sobic001G281900 Sobic001G145500--Sobic001G281900 Sobic001G145500--Sobic007G176200 Sobic004G010900 Sobic004G010900 Sobic001G145500--Sobic004G010900 Sobic001G145500--Sobic006G252200 Sobic003G330500 Sobic003G330500 Sobic001G145500--Sobic003G330500 Sobic002G029300 Sobic002G029300 Sobic001G145500--Sobic002G029300 Sobic008G137600 Sobic008G137600 Sobic006G109700--Sobic008G137600 Sobic006G109700--Sobic001G444300 Sobic006G183000 Sobic006G183000 Sobic006G109700--Sobic006G183000 Sobic001G294900 Sobic001G294900 Sobic006G109700--Sobic001G294900 Sobic009G168000 Sobic009G168000 Sobic006G109700--Sobic009G168000 Sobic006G109700--Sobic006G211800 Sobic006G231500 Sobic006G231500 Sobic006G109700--Sobic006G231500 Sobic006G109700--Sobic004G348900 Sobic001G502200 Sobic001G502200 Sobic006G109700--Sobic001G502200 Sobic003G043400 Sobic003G043400 Sobic002G423800--Sobic003G043400 Sobic002G423800--Sobic006G211800 Sobic001G010700 Sobic001G010700 Sobic002G423800--Sobic001G010700 Sobic002G423800--Sobic001G444300 Sobic002G423800--Sobic002G428200 Sobic001G542900 Sobic001G542900 Sobic002G423800--Sobic001G542900 Sobic002G423800--Sobic006G252200 Sobic008G145100 Sobic008G145100 Sobic002G423800--Sobic008G145100 Sobic002G423800--Sobic007G176200 Sobic006G211800--Sobic002G428200 Sobic006G211800--Sobic007G176200 Sobic006G211800--Sobic002G423800 Sobic006G211800--Sobic006G252200 Sobic006G211800--Sobic005G105500 Sobic009G234400 Sobic009G234400 Sobic006G211800--Sobic009G234400 Sobic006G211800--Sobic001G444300 Sobic001G404100 Sobic001G404100 Sobic006G211800--Sobic001G404100 Sobic009G212300 Sobic009G212300 Sobic006G211800--Sobic009G212300 Sobic001G458700 Sobic001G458700 Sobic007G176200--Sobic001G458700 Sobic007G176200--Sobic001G010700 Sobic007G176200--Sobic006G252200 Sobic007G176200--Sobic003G330500 Sobic004G224900 Sobic004G224900 Sobic007G176200--Sobic004G224900 Sobic007G176200--Sobic002G428200 Sobic004G335000 Sobic004G335000 Sobic007G176200--Sobic004G335000 Sobic002G341800 Sobic002G341800 Sobic007G176200--Sobic002G341800 Sobic009G067000 Sobic009G067000 Sobic007G176200--Sobic009G067000 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic006G252200--Sobic004G224900 Sobic006G252200--Sobic001G010700 Sobic006G252200--Sobic003G330500 Sobic006G252200--Sobic002G428200 Sobic004G138800 Sobic004G138800 Sobic006G252200--Sobic004G138800 Sobic001G283200 Sobic001G283200 Sobic006G252200--Sobic001G283200 Sobic001G096100 Sobic001G096100 Sobic006G252200--Sobic001G096100 Sobic002G428200--Sobic004G335000 Sobic002G428200--Sobic007G176200 Sobic002G428200--Sobic006G211800 Sobic002G428200--Sobic004G224900 Sobic002G428200--Sobic006G252200 Sobic002G428200--Sobic001G502200 Sobic002G428200--Sobic008G137600 Sobic002G428200--Sobic001G010700 Sobic002G428200--Sobic003G104700 Sobic003G104700--Sobic002G428200 Sobic003G104700--Sobic006G252200 Sobic007G076300 Sobic007G076300 Sobic003G104700--Sobic007G076300 Sobic002G078400 Sobic002G078400 Sobic003G104700--Sobic002G078400 Sobic003G367451 Sobic003G367451 Sobic003G104700--Sobic003G367451 Sobic007G091000 Sobic007G091000 Sobic003G104700--Sobic007G091000 Sobic001G236300 Sobic001G236300 Sobic003G104700--Sobic001G236300 Sobic003G104700--Sobic004G224900 Sobic003G104700--Sobic004G335000 Sobic004G348900--Sobic001G283200 Sobic003G077900 Sobic003G077900 Sobic004G348900--Sobic003G077900 Sobic004G181900 Sobic004G181900 Sobic004G348900--Sobic004G181900 Sobic004G348900--Sobic001G404100 Sobic001G206900 Sobic001G206900 Sobic004G348900--Sobic001G206900 Sobic001G085100 Sobic001G085100 Sobic004G348900--Sobic001G085100 Sobic002G400000 Sobic002G400000 Sobic004G348900--Sobic002G400000 Sobic004G348900--Sobic001G444300 Sobic001G323000 Sobic001G323000 Sobic004G348900--Sobic001G323000
Octagon: transcription factors


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