Gene annotation
Transcriptome id Sobic.001G010700.1
Synonym EMB2107, RPN5A, MSA, Sb01g001050
Functional annotation proteasome subunit, putative, expressed
UniProt C5WSV1
Pfam PF01399
Panther DB PTHR10855 PTHR10855:SF1
NCBI CDD -
KEGG Orthology K03035; PSMD12, 26S proteasome regulatory subunit N5
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G09900 : 26S proteasome regulatory subunit, putative (RPN5)
RAP-DB (Rice) LOC_Os03g63430.1 : proteasome subunit, putative, expressed
MaizeGDB (Corn) Zm00025a036038 , Zm00025a022655 , Zm00025a016324
Brachypodium KQK14676
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G010700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
2 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
3 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
4 Sobic.003G330500 peptidase, T1 family, putative, expressed -
5 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
6 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
7 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
8 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
9 Sobic.002G423800 trafficking protein particle complex subunit, putative, expressed -
10 Sobic.002G029300 pleckstrin homology domain-containing protein, putative, expressed -
11 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
12 Sobic.003G021200 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
13 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
14 Sobic.002G257400 peptidase, T1 family, putative, expressed -
15 Sobic.007G142500 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
16 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
17 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
18 Sobic.004G081800 Ubiquitin family domain containing protein, expressed K11885: DNA damage-inducible protein 1
19 Sobic.009G067000 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
20 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5


Gene co-expression network
sample Sobic001G010700 Sobic001G010700 Sobic007G176200 Sobic007G176200 Sobic001G010700--Sobic007G176200 Sobic006G252200 Sobic006G252200 Sobic001G010700--Sobic006G252200 Sobic001G458700 Sobic001G458700 Sobic001G010700--Sobic001G458700 Sobic003G330500 Sobic003G330500 Sobic001G010700--Sobic003G330500 Sobic004G335000 Sobic004G335000 Sobic001G010700--Sobic004G335000 Sobic002G428200 Sobic002G428200 Sobic001G010700--Sobic002G428200 Sobic004G224900 Sobic004G224900 Sobic001G010700--Sobic004G224900 Sobic003G043400 Sobic003G043400 Sobic001G010700--Sobic003G043400 Sobic002G423800 Sobic002G423800 Sobic001G010700--Sobic002G423800 Sobic007G176200--Sobic001G458700 Sobic007G176200--Sobic001G010700 Sobic007G176200--Sobic006G252200 Sobic007G176200--Sobic003G330500 Sobic007G176200--Sobic004G224900 Sobic007G176200--Sobic002G428200 Sobic007G176200--Sobic004G335000 Sobic002G341800 Sobic002G341800 Sobic007G176200--Sobic002G341800 Sobic009G067000 Sobic009G067000 Sobic007G176200--Sobic009G067000 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic006G252200--Sobic004G224900 Sobic006G252200--Sobic001G010700 Sobic006G252200--Sobic003G330500 Sobic006G252200--Sobic002G428200 Sobic004G138800 Sobic004G138800 Sobic006G252200--Sobic004G138800 Sobic001G283200 Sobic001G283200 Sobic006G252200--Sobic001G283200 Sobic001G096100 Sobic001G096100 Sobic006G252200--Sobic001G096100 Sobic001G458700--Sobic007G176200 Sobic001G458700--Sobic006G252200 Sobic001G458700--Sobic001G010700 Sobic001G458700--Sobic002G341800 Sobic001G458700--Sobic004G224900 Sobic001G458700--Sobic003G330500 Sobic001G458700--Sobic001G283200 Sobic001G502200 Sobic001G502200 Sobic001G458700--Sobic001G502200 Sobic004G081800 Sobic004G081800 Sobic001G458700--Sobic004G081800 Sobic003G330500--Sobic004G224900 Sobic003G330500--Sobic007G176200 Sobic007G076300 Sobic007G076300 Sobic003G330500--Sobic007G076300 Sobic003G330500--Sobic006G252200 Sobic003G330500--Sobic001G458700 Sobic003G330500--Sobic001G010700 Sobic003G330500--Sobic001G502200 Sobic003G330500--Sobic004G138800 Sobic003G330500--Sobic001G096100 Sobic004G335000--Sobic002G428200 Sobic004G335000--Sobic007G176200 Sobic004G335000--Sobic001G010700 Sobic002G257400 Sobic002G257400 Sobic004G335000--Sobic002G257400 Sobic004G335000--Sobic006G252200 Sobic001G236300 Sobic001G236300 Sobic004G335000--Sobic001G236300 Sobic001G461900 Sobic001G461900 Sobic004G335000--Sobic001G461900 Sobic001G058100 Sobic001G058100 Sobic004G335000--Sobic001G058100 Sobic007G045600 Sobic007G045600 Sobic004G335000--Sobic007G045600 Sobic002G428200--Sobic004G335000 Sobic002G428200--Sobic007G176200 Sobic006G211800 Sobic006G211800 Sobic002G428200--Sobic006G211800 Sobic002G428200--Sobic004G224900 Sobic002G428200--Sobic006G252200 Sobic002G428200--Sobic001G502200 Sobic008G137600 Sobic008G137600 Sobic002G428200--Sobic008G137600 Sobic002G428200--Sobic001G010700 Sobic003G104700 Sobic003G104700 Sobic002G428200--Sobic003G104700 Sobic004G224900--Sobic003G330500 Sobic004G224900--Sobic006G252200 Sobic004G224900--Sobic007G176200 Sobic004G224900--Sobic004G138800 Sobic004G224900--Sobic007G076300 Sobic001G481700 Sobic001G481700 Sobic004G224900--Sobic001G481700 Sobic004G224900--Sobic001G502200 Sobic004G224900--Sobic001G458700 Sobic004G224900--Sobic001G236300 Sobic003G043400--Sobic002G423800 Sobic003G043400--Sobic001G010700 Sobic003G043400--Sobic002G428200 Sobic003G043400--Sobic008G137600 Sobic002G261900 Sobic002G261900 Sobic003G043400--Sobic002G261900 Sobic001G532100 Sobic001G532100 Sobic003G043400--Sobic001G532100 Sobic003G043400--Sobic004G335000 Sobic007G152400 Sobic007G152400 Sobic003G043400--Sobic007G152400 Sobic006G222400 Sobic006G222400 Sobic003G043400--Sobic006G222400 Sobic002G423800--Sobic003G043400 Sobic002G423800--Sobic006G211800 Sobic002G423800--Sobic001G010700 Sobic001G444300 Sobic001G444300 Sobic002G423800--Sobic001G444300 Sobic002G423800--Sobic002G428200 Sobic001G542900 Sobic001G542900 Sobic002G423800--Sobic001G542900 Sobic002G423800--Sobic006G252200 Sobic008G145100 Sobic008G145100 Sobic002G423800--Sobic008G145100 Sobic002G423800--Sobic007G176200
Octagon: transcription factors


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