Gene annotation
Transcriptome id Sobic.004G081800.1
Synonym Sb04g006730
Functional annotation Ubiquitin family domain containing protein, expressed
UniProt C5XXJ0
Pfam PF00627 PF13650 PF00240
Panther DB PTHR12917 PTHR12917:SF1
NCBI CDD KOG0012; DNA damage inducible protein
KEGG Orthology K11885; DNA damage-inducible protein 1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G13235 : ubiquitin family protein
RAP-DB (Rice) LOC_Os02g10510.1 : Ubiquitin family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034645
Brachypodium KQJ93890
Barley HORVU6Hr1G032800.9 , HORVU6Hr1G032800.8 , HORVU6Hr1G032800.3 , HORVU6Hr1G032800.2 , HORVU6Hr1G032800.5 , HORVU6Hr1G032800.4 , HORVU6Hr1G032800.7 , HORVU6Hr1G032800.6 , HORVU6Hr1G032800.15 , HORVU6Hr1G032800.14 , HORVU6Hr1G032800.17 , HORVU6Hr1G032800.16 , HORVU6Hr1G032800.11 , HORVU6Hr1G032800.10 , HORVU6Hr1G032800.13 , HORVU6Hr1G032800.12
Wheat TraesCS6B02G189600 , TraesCS6D02G151400 , TraesCS6D02G151400 , TraesCS6D02G151400 , TraesCS6A02G161500 , TraesCS6A02G161500 , TraesCS6A02G161500
Populus -


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cDNA sequences
Sobic.004G081800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
2 Sobic.003G261400 DUF292 domain containing protein, expressed -
3 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
4 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
5 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
6 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
7 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
8 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
9 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
10 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
11 Sobic.003G330500 peptidase, T1 family, putative, expressed -
12 Sobic.010G057900 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
13 Sobic.002G143000 ubiquitin family protein, putative, expressed -
14 Sobic.003G261500 lipase, putative, expressed -
15 Sobic.006G244700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed K00794: ribH, 6,7-dimethyl-8-ribityllumazine synthase
16 Sobic.004G212200 enhancer of rudimentary protein, putative, expressed -
17 Sobic.004G086600 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6
18 Sobic.007G061400 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
19 Sobic.004G082900 26S protease regulatory subunit, putative, expressed K03064: PSMC6, 26S proteasome regulatory subunit T4
20 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11


Gene co-expression network
sample Sobic004G081800 Sobic004G081800 Sobic001G458700 Sobic001G458700 Sobic004G081800--Sobic001G458700 Sobic003G261400 Sobic003G261400 Sobic004G081800--Sobic003G261400 Sobic002G341800 Sobic002G341800 Sobic004G081800--Sobic002G341800 Sobic004G224900 Sobic004G224900 Sobic004G081800--Sobic004G224900 Sobic007G176200 Sobic007G176200 Sobic004G081800--Sobic007G176200 Sobic001G502200 Sobic001G502200 Sobic004G081800--Sobic001G502200 Sobic001G010700 Sobic001G010700 Sobic004G081800--Sobic001G010700 Sobic007G168600 Sobic007G168600 Sobic004G081800--Sobic007G168600 Sobic006G252200 Sobic006G252200 Sobic004G081800--Sobic006G252200 Sobic001G458700--Sobic007G176200 Sobic001G458700--Sobic006G252200 Sobic001G458700--Sobic001G010700 Sobic001G458700--Sobic002G341800 Sobic001G458700--Sobic004G224900 Sobic003G330500 Sobic003G330500 Sobic001G458700--Sobic003G330500 Sobic001G283200 Sobic001G283200 Sobic001G458700--Sobic001G283200 Sobic001G458700--Sobic001G502200 Sobic001G458700--Sobic004G081800 Sobic003G261400--Sobic001G283200 Sobic002G281300 Sobic002G281300 Sobic003G261400--Sobic002G281300 Sobic003G261500 Sobic003G261500 Sobic003G261400--Sobic003G261500 Sobic007G045600 Sobic007G045600 Sobic003G261400--Sobic007G045600 Sobic003G261400--Sobic001G458700 Sobic004G130900 Sobic004G130900 Sobic003G261400--Sobic004G130900 Sobic003G124800 Sobic003G124800 Sobic003G261400--Sobic003G124800 Sobic001G051200 Sobic001G051200 Sobic003G261400--Sobic001G051200 Sobic010G000900 Sobic010G000900 Sobic003G261400--Sobic010G000900 Sobic002G341800--Sobic001G458700 Sobic001G404100 Sobic001G404100 Sobic002G341800--Sobic001G404100 Sobic001G481700 Sobic001G481700 Sobic002G341800--Sobic001G481700 Sobic002G341800--Sobic007G176200 Sobic006G044600 Sobic006G044600 Sobic002G341800--Sobic006G044600 Sobic002G394600 Sobic002G394600 Sobic002G341800--Sobic002G394600 Sobic005G105500 Sobic005G105500 Sobic002G341800--Sobic005G105500 Sobic008G137600 Sobic008G137600 Sobic002G341800--Sobic008G137600 Sobic002G341800--Sobic004G081800 Sobic004G224900--Sobic003G330500 Sobic004G224900--Sobic006G252200 Sobic004G224900--Sobic007G176200 Sobic004G138800 Sobic004G138800 Sobic004G224900--Sobic004G138800 Sobic007G076300 Sobic007G076300 Sobic004G224900--Sobic007G076300 Sobic004G224900--Sobic001G481700 Sobic004G224900--Sobic001G502200 Sobic004G224900--Sobic001G458700 Sobic001G236300 Sobic001G236300 Sobic004G224900--Sobic001G236300 Sobic007G176200--Sobic001G458700 Sobic007G176200--Sobic001G010700 Sobic007G176200--Sobic006G252200 Sobic007G176200--Sobic003G330500 Sobic007G176200--Sobic004G224900 Sobic002G428200 Sobic002G428200 Sobic007G176200--Sobic002G428200 Sobic004G335000 Sobic004G335000 Sobic007G176200--Sobic004G335000 Sobic007G176200--Sobic002G341800 Sobic009G067000 Sobic009G067000 Sobic007G176200--Sobic009G067000 Sobic001G315500 Sobic001G315500 Sobic001G502200--Sobic001G315500 Sobic001G502200--Sobic007G168600 Sobic001G502200--Sobic004G224900 Sobic001G502200--Sobic003G124800 Sobic001G502200--Sobic001G458700 Sobic001G502200--Sobic003G330500 Sobic001G502200--Sobic002G428200 Sobic002G078400 Sobic002G078400 Sobic001G502200--Sobic002G078400 Sobic001G502200--Sobic006G252200 Sobic001G010700--Sobic007G176200 Sobic001G010700--Sobic006G252200 Sobic001G010700--Sobic001G458700 Sobic001G010700--Sobic003G330500 Sobic001G010700--Sobic004G335000 Sobic001G010700--Sobic002G428200 Sobic001G010700--Sobic004G224900 Sobic003G043400 Sobic003G043400 Sobic001G010700--Sobic003G043400 Sobic002G423800 Sobic002G423800 Sobic001G010700--Sobic002G423800 Sobic002G400000 Sobic002G400000 Sobic007G168600--Sobic002G400000 Sobic009G198500 Sobic009G198500 Sobic007G168600--Sobic009G198500 Sobic004G086600 Sobic004G086600 Sobic007G168600--Sobic004G086600 Sobic007G168600--Sobic001G502200 Sobic003G077900 Sobic003G077900 Sobic007G168600--Sobic003G077900 Sobic010G205300 Sobic010G205300 Sobic007G168600--Sobic010G205300 Sobic007G168600--Sobic003G124800 Sobic001G461900 Sobic001G461900 Sobic007G168600--Sobic001G461900 Sobic001G314500 Sobic001G314500 Sobic007G168600--Sobic001G314500 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic006G252200--Sobic004G224900 Sobic006G252200--Sobic001G010700 Sobic006G252200--Sobic003G330500 Sobic006G252200--Sobic002G428200 Sobic006G252200--Sobic004G138800 Sobic006G252200--Sobic001G283200 Sobic001G096100 Sobic001G096100 Sobic006G252200--Sobic001G096100
Octagon: transcription factors


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