Gene annotation
Transcriptome id Sobic.010G057900.1
Synonym RPT5A, Sb10g005010, ATS6A.2
Functional annotation 26S protease regulatory subunit 6A, putative, expressed
UniProt C5Z5B4
Pfam PF07728
Panther DB PTHR23073 PTHR23073:SF7
NCBI CDD -
KEGG Orthology K03065; PSMC3, 26S proteasome regulatory subunit T5
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT3G05530 : regulatory particle triple-A ATPase 5A
RAP-DB (Rice) LOC_Os06g07630.1 : 26S protease regulatory subunit 6A, putative, expressed
MaizeGDB (Corn) Zm00025a042856 , Zm00025a049844 , Zm00025a049843 , Zm00025a049861 , Zm00025a022510
Brachypodium KQK19391 , PNT76419 , KQK01210
Barley HORVU6Hr1G087650.1 , HORVU6Hr1G087650.2
Wheat TraesCS7D02G134800 , TraesCS7B02G036400 , TraesCS3B02G457100 , TraesCS3A02G421900 , TraesCS3D02G417000 , TraesCS3D02G417000
Populus -


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cDNA sequences
Sobic.010G057900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G268400 expressed protein -
2 Sobic.006G101700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
3 Sobic.002G143000 ubiquitin family protein, putative, expressed -
4 Sobic.001G078800 similar to Serine/threonine-protein kinase SAPK8(PubMedID : 29862293)@CAMK_CAMK_like.22 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
5 Sobic.003G314100 AGAP000951-PA, putative, expressed -
6 Sobic.009G192000 transcription initiation factor IIF beta subunit, putative, expressed K03139: TFIIF2, GTF2F2, transcription initiation factor TFIIF subunit beta
7 Sobic.010G205300 secreted salivary protein, putative, expressed -
8 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
9 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
10 Sobic.009G075800 serine/threonine protein phosphatase 5, putative, expressed K04460: serine/threonine-protein phosphatase 5
11 Sobic.002G256200 cyclin, putative, expressed K15161: CCNC, cyclin-C
12 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
13 Sobic.004G232800 expressed protein -
14 Sobic.004G081800 Ubiquitin family domain containing protein, expressed K11885: DNA damage-inducible protein 1
15 Sobic.003G261400 DUF292 domain containing protein, expressed -
16 Sobic.004G074300 phytoene dehydrogenase-like, putative, expressed K16750: biogenesis of lysosome-related organelles complex 1 subunit 2
17 Sobic.001G082100 TIP41, putative, expressed K17607: TIPRL, type 2A phosphatase activator TIP41
18 Sobic.001G263000 membrane associated DUF588 domain containing protein, putative, expressed -
19 Sobic.009G004600 transcription initiation factor IIA gamma chain, putative, expressed K03123: TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
20 Sobic.006G270900 acyl-CoA-binding domain-containing protein 6, putative, expressed -


Gene co-expression network
sample Sobic010G057900 Sobic010G057900 Sobic002G268400 Sobic002G268400 Sobic010G057900--Sobic002G268400 Sobic006G101700 Sobic006G101700 Sobic010G057900--Sobic006G101700 Sobic002G143000 Sobic002G143000 Sobic010G057900--Sobic002G143000 Sobic001G078800 Sobic001G078800 Sobic010G057900--Sobic001G078800 Sobic003G314100 Sobic003G314100 Sobic010G057900--Sobic003G314100 Sobic009G192000 Sobic009G192000 Sobic010G057900--Sobic009G192000 Sobic010G205300 Sobic010G205300 Sobic010G057900--Sobic010G205300 Sobic001G458700 Sobic001G458700 Sobic010G057900--Sobic001G458700 Sobic004G356900 Sobic004G356900 Sobic010G057900--Sobic004G356900 Sobic002G268400--Sobic010G057900 Sobic001G152000 Sobic001G152000 Sobic002G268400--Sobic001G152000 Sobic004G074300 Sobic004G074300 Sobic002G268400--Sobic004G074300 Sobic006G252100 Sobic006G252100 Sobic002G268400--Sobic006G252100 Sobic009G033900 Sobic009G033900 Sobic002G268400--Sobic009G033900 Sobic006G270900 Sobic006G270900 Sobic002G268400--Sobic006G270900 Sobic006G183000 Sobic006G183000 Sobic002G268400--Sobic006G183000 Sobic002G268400--Sobic004G356900 Sobic003G439800 Sobic003G439800 Sobic002G268400--Sobic003G439800 Sobic004G066200 Sobic004G066200 Sobic006G101700--Sobic004G066200 Sobic007G166400 Sobic007G166400 Sobic006G101700--Sobic007G166400 Sobic001G085100 Sobic001G085100 Sobic006G101700--Sobic001G085100 Sobic001G080700 Sobic001G080700 Sobic006G101700--Sobic001G080700 Sobic009G222500 Sobic009G222500 Sobic006G101700--Sobic009G222500 Sobic009G165800 Sobic009G165800 Sobic006G101700--Sobic009G165800 Sobic002G192200 Sobic002G192200 Sobic006G101700--Sobic002G192200 Sobic006G049700 Sobic006G049700 Sobic006G101700--Sobic006G049700 Sobic001G512300 Sobic001G512300 Sobic006G101700--Sobic001G512300 Sobic002G143000--Sobic010G057900 Sobic002G143000--Sobic001G458700 Sobic004G326600 Sobic004G326600 Sobic002G143000--Sobic004G326600 Sobic004G081800 Sobic004G081800 Sobic002G143000--Sobic004G081800 Sobic002G341800 Sobic002G341800 Sobic002G143000--Sobic002G341800 Sobic005G105500 Sobic005G105500 Sobic002G143000--Sobic005G105500 Sobic006G056600 Sobic006G056600 Sobic002G143000--Sobic006G056600 Sobic001G091900 Sobic001G091900 Sobic002G143000--Sobic001G091900 Sobic002G143000--Sobic002G268400 Sobic003G261400 Sobic003G261400 Sobic001G078800--Sobic003G261400 Sobic001G078800--Sobic010G205300 Sobic001G078800--Sobic010G057900 Sobic002G400000 Sobic002G400000 Sobic001G078800--Sobic002G400000 Sobic001G078800--Sobic001G085100 Sobic007G168600 Sobic007G168600 Sobic001G078800--Sobic007G168600 Sobic001G206900 Sobic001G206900 Sobic001G078800--Sobic001G206900 Sobic001G051200 Sobic001G051200 Sobic001G078800--Sobic001G051200 Sobic003G077900 Sobic003G077900 Sobic001G078800--Sobic003G077900 Sobic003G314100--Sobic010G057900 Sobic003G314100--Sobic002G268400 Sobic006G250900 Sobic006G250900 Sobic003G314100--Sobic006G250900 Sobic003G314100--Sobic006G101700 Sobic003G314100--Sobic004G356900 Sobic001G263000 Sobic001G263000 Sobic003G314100--Sobic001G263000 Sobic003G314100--Sobic009G165800 Sobic003G226500 Sobic003G226500 Sobic003G314100--Sobic003G226500 Sobic001G281600 Sobic001G281600 Sobic003G314100--Sobic001G281600 Sobic001G031100 Sobic001G031100 Sobic009G192000--Sobic001G031100 Sobic007G167900 Sobic007G167900 Sobic009G192000--Sobic007G167900 Sobic010G020400 Sobic010G020400 Sobic009G192000--Sobic010G020400 Sobic003G349300 Sobic003G349300 Sobic009G192000--Sobic003G349300 Sobic001G014800 Sobic001G014800 Sobic009G192000--Sobic001G014800 Sobic003G338500 Sobic003G338500 Sobic009G192000--Sobic003G338500 Sobic006G180000 Sobic006G180000 Sobic009G192000--Sobic006G180000 Sobic009G192000--Sobic010G205300 Sobic003G374000 Sobic003G374000 Sobic009G192000--Sobic003G374000 Sobic004G232800 Sobic004G232800 Sobic010G205300--Sobic004G232800 Sobic010G205300--Sobic003G349300 Sobic010G205300--Sobic007G168600 Sobic001G502200 Sobic001G502200 Sobic010G205300--Sobic001G502200 Sobic002G281300 Sobic002G281300 Sobic010G205300--Sobic002G281300 Sobic010G205300--Sobic004G356900 Sobic010G205300--Sobic003G261400 Sobic004G194900 Sobic004G194900 Sobic010G205300--Sobic004G194900 Sobic001G067900 Sobic001G067900 Sobic010G205300--Sobic001G067900 Sobic007G176200 Sobic007G176200 Sobic001G458700--Sobic007G176200 Sobic006G252200 Sobic006G252200 Sobic001G458700--Sobic006G252200 Sobic001G010700 Sobic001G010700 Sobic001G458700--Sobic001G010700 Sobic001G458700--Sobic002G341800 Sobic004G224900 Sobic004G224900 Sobic001G458700--Sobic004G224900 Sobic003G330500 Sobic003G330500 Sobic001G458700--Sobic003G330500 Sobic001G283200 Sobic001G283200 Sobic001G458700--Sobic001G283200 Sobic001G458700--Sobic001G502200 Sobic001G458700--Sobic004G081800 Sobic008G004400 Sobic008G004400 Sobic004G356900--Sobic008G004400 Sobic004G226800 Sobic004G226800 Sobic004G356900--Sobic004G226800 Sobic009G004600 Sobic009G004600 Sobic004G356900--Sobic009G004600 Sobic010G193800 Sobic010G193800 Sobic004G356900--Sobic010G193800 Sobic004G356900--Sobic010G205300 Sobic004G356900--Sobic006G101700 Sobic004G356900--Sobic004G232800 Sobic004G356900--Sobic002G268400 Sobic003G239800 Sobic003G239800 Sobic004G356900--Sobic003G239800
Octagon: transcription factors


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