Gene annotation
Transcriptome id Sobic.003G314100.1
Synonym Sb03g036180
Functional annotation AGAP000951-PA, putative, expressed
UniProt C5XLM1
Pfam PF10607
Panther DB PTHR12864
NCBI CDD KOG2659; LisH motif-containing protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G06060 : LisH and RanBPM domains containing protein
RAP-DB (Rice) LOC_Os01g56820.1 : AGAP000951-PA, putative, expressed
MaizeGDB (Corn) Zm00025a039907
Brachypodium KQK10020
Barley HORVU3Hr1G075910.6 , HORVU3Hr1G075910.5 , HORVU3Hr1G075910.4 , HORVU3Hr1G075910.3 , HORVU3Hr1G075910.2 , HORVU3Hr1G075910.1
Wheat TraesCS3B02G345000 , TraesCS3B02G345000 , TraesCS3D02G310500 , TraesCS3A02G320800 , TraesCS6D02G398000
Populus -


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cDNA sequences
Sobic.003G314100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G057900 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
2 Sobic.002G268400 expressed protein -
3 Sobic.006G250900 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
4 Sobic.006G101700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
5 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
6 Sobic.001G263000 membrane associated DUF588 domain containing protein, putative, expressed -
7 Sobic.009G165800 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
8 Sobic.003G226500 suppressor of G2 allele of SKP1, putative, expressed K12795: SUGT1, suppressor of G2 allele of SKP1
9 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
10 Sobic.006G270900 acyl-CoA-binding domain-containing protein 6, putative, expressed -
11 Sobic.009G004600 transcription initiation factor IIA gamma chain, putative, expressed K03123: TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
12 Sobic.004G185600 expressed protein -
13 Sobic.006G183000 RING zinc finger protein, putative, expressed -
14 Sobic.002G281300 trafficking protein particle complex subunit, putative, expressed -
15 Sobic.008G004400 GIL1, putative, expressed -
16 Sobic.003G261400 DUF292 domain containing protein, expressed -
17 Sobic.010G251000 ubiquitin-conjugating enzyme, putative, expressed K10579: UBE2M, ubiquitin-conjugating enzyme E2 M
18 Sobic.002G087900 protein phosphatase inhibitor 2 containing protein, expressed K16833: PPP1R2, protein phosphatase inhibitor 2
19 Sobic.001G226100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
20 Sobic.001G314500 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I


Gene co-expression network
sample Sobic003G314100 Sobic003G314100 Sobic010G057900 Sobic010G057900 Sobic003G314100--Sobic010G057900 Sobic002G268400 Sobic002G268400 Sobic003G314100--Sobic002G268400 Sobic006G250900 Sobic006G250900 Sobic003G314100--Sobic006G250900 Sobic006G101700 Sobic006G101700 Sobic003G314100--Sobic006G101700 Sobic004G356900 Sobic004G356900 Sobic003G314100--Sobic004G356900 Sobic001G263000 Sobic001G263000 Sobic003G314100--Sobic001G263000 Sobic009G165800 Sobic009G165800 Sobic003G314100--Sobic009G165800 Sobic003G226500 Sobic003G226500 Sobic003G314100--Sobic003G226500 Sobic001G281600 Sobic001G281600 Sobic003G314100--Sobic001G281600 Sobic010G057900--Sobic002G268400 Sobic010G057900--Sobic006G101700 Sobic002G143000 Sobic002G143000 Sobic010G057900--Sobic002G143000 Sobic001G078800 Sobic001G078800 Sobic010G057900--Sobic001G078800 Sobic010G057900--Sobic003G314100 Sobic009G192000 Sobic009G192000 Sobic010G057900--Sobic009G192000 Sobic010G205300 Sobic010G205300 Sobic010G057900--Sobic010G205300 Sobic001G458700 Sobic001G458700 Sobic010G057900--Sobic001G458700 Sobic010G057900--Sobic004G356900 Sobic002G268400--Sobic010G057900 Sobic001G152000 Sobic001G152000 Sobic002G268400--Sobic001G152000 Sobic004G074300 Sobic004G074300 Sobic002G268400--Sobic004G074300 Sobic006G252100 Sobic006G252100 Sobic002G268400--Sobic006G252100 Sobic009G033900 Sobic009G033900 Sobic002G268400--Sobic009G033900 Sobic006G270900 Sobic006G270900 Sobic002G268400--Sobic006G270900 Sobic006G183000 Sobic006G183000 Sobic002G268400--Sobic006G183000 Sobic002G268400--Sobic004G356900 Sobic003G439800 Sobic003G439800 Sobic002G268400--Sobic003G439800 Sobic002G281300 Sobic002G281300 Sobic006G250900--Sobic002G281300 Sobic001G067900 Sobic001G067900 Sobic006G250900--Sobic001G067900 Sobic003G261400 Sobic003G261400 Sobic006G250900--Sobic003G261400 Sobic002G378200 Sobic002G378200 Sobic006G250900--Sobic002G378200 Sobic006G250900--Sobic003G314100 Sobic003G007500 Sobic003G007500 Sobic006G250900--Sobic003G007500 Sobic001G054200 Sobic001G054200 Sobic006G250900--Sobic001G054200 Sobic006G250900--Sobic003G226500 Sobic006G250900--Sobic010G057900 Sobic004G066200 Sobic004G066200 Sobic006G101700--Sobic004G066200 Sobic007G166400 Sobic007G166400 Sobic006G101700--Sobic007G166400 Sobic001G085100 Sobic001G085100 Sobic006G101700--Sobic001G085100 Sobic001G080700 Sobic001G080700 Sobic006G101700--Sobic001G080700 Sobic009G222500 Sobic009G222500 Sobic006G101700--Sobic009G222500 Sobic006G101700--Sobic009G165800 Sobic002G192200 Sobic002G192200 Sobic006G101700--Sobic002G192200 Sobic006G049700 Sobic006G049700 Sobic006G101700--Sobic006G049700 Sobic001G512300 Sobic001G512300 Sobic006G101700--Sobic001G512300 Sobic008G004400 Sobic008G004400 Sobic004G356900--Sobic008G004400 Sobic004G226800 Sobic004G226800 Sobic004G356900--Sobic004G226800 Sobic009G004600 Sobic009G004600 Sobic004G356900--Sobic009G004600 Sobic010G193800 Sobic010G193800 Sobic004G356900--Sobic010G193800 Sobic004G356900--Sobic010G205300 Sobic004G356900--Sobic006G101700 Sobic004G232800 Sobic004G232800 Sobic004G356900--Sobic004G232800 Sobic004G356900--Sobic002G268400 Sobic003G239800 Sobic003G239800 Sobic004G356900--Sobic003G239800 Sobic001G263000--Sobic009G004600 Sobic006G244700 Sobic006G244700 Sobic001G263000--Sobic006G244700 Sobic001G263000--Sobic009G033900 Sobic002G209400 Sobic002G209400 Sobic001G263000--Sobic002G209400 Sobic001G263000--Sobic002G268400 Sobic002G039000 Sobic002G039000 Sobic001G263000--Sobic002G039000 Sobic001G263000--Sobic004G074300 Sobic001G263000--Sobic004G356900 Sobic001G263000--Sobic010G057900 Sobic009G165800--Sobic001G080700 Sobic001G047400 Sobic001G047400 Sobic009G165800--Sobic001G047400 Sobic009G165800--Sobic006G101700 Sobic002G110700 Sobic002G110700 Sobic009G165800--Sobic002G110700 Sobic003G015900 Sobic003G015900 Sobic009G165800--Sobic003G015900 Sobic010G083700 Sobic010G083700 Sobic009G165800--Sobic010G083700 Sobic010G251000 Sobic010G251000 Sobic009G165800--Sobic010G251000 Sobic004G121100 Sobic004G121100 Sobic009G165800--Sobic004G121100 Sobic003G264200 Sobic003G264200 Sobic009G165800--Sobic003G264200 Sobic003G250500 Sobic003G250500 Sobic003G226500--Sobic003G250500 Sobic004G104900 Sobic004G104900 Sobic003G226500--Sobic004G104900 Sobic003G226500--Sobic003G007500 Sobic003G350600 Sobic003G350600 Sobic003G226500--Sobic003G350600 Sobic001G136900 Sobic001G136900 Sobic003G226500--Sobic001G136900 Sobic003G226500--Sobic010G083700 Sobic003G226500--Sobic004G226800 Sobic001G512600 Sobic001G512600 Sobic003G226500--Sobic001G512600 Sobic003G226500--Sobic001G054200 Sobic010G279700 Sobic010G279700 Sobic001G281600--Sobic010G279700 Sobic007G078500 Sobic007G078500 Sobic001G281600--Sobic007G078500 Sobic006G200600 Sobic006G200600 Sobic001G281600--Sobic006G200600 Sobic003G401100 Sobic003G401100 Sobic001G281600--Sobic003G401100 Sobic001G281600--Sobic004G121100 Sobic009G215800 Sobic009G215800 Sobic001G281600--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic001G281600--Sobic004G084300 Sobic009G050900 Sobic009G050900 Sobic001G281600--Sobic009G050900 Sobic008G179700 Sobic008G179700 Sobic001G281600--Sobic008G179700
Octagon: transcription factors


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