Gene annotation
Transcriptome id Sobic.001G314500.1
Synonym SCE1A, ATSCE1, EMB1637, Sb01g030580, SCE1, AHUS5
Functional annotation ubiquitin-conjugating enzyme, putative, expressed
UniProt C5WUE8
Pfam PF00179
Panther DB PTHR24067 PTHR24067:SF153
NCBI CDD KOG0424; Ubiquitin-protein ligase
KEGG Orthology K10577; UBE2I, ubiquitin-conjugating enzyme E2 I
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G57870 : sumo conjugation enzyme 1
RAP-DB (Rice) LOC_Os03g03130.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a052246 , Zm00025a003147
Brachypodium KQK23919
Barley -
Wheat TraesCS4D02G341600 , TraesCS4D02G341600 , TraesCS1D02G203200 , TraesCS1B02G214400 , TraesCS1B02G214400 , TraesCS1A02G199500 , TraesCS5A02G515400
Populus -


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cDNA sequences
Sobic.001G314500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G212100 expressed protein -
2 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
3 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
4 Sobic.001G388200 ELMO/CED-12 family protein, putative, expressed -
5 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
6 Sobic.001G054200 green ripe-like, putative, expressed -
7 Sobic.009G004600 transcription initiation factor IIA gamma chain, putative, expressed K03123: TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
8 Sobic.010G205300 secreted salivary protein, putative, expressed -
9 Sobic.003G217400 zinc finger, C3HC4 type family protein, expressed -
10 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
11 Sobic.004G272300 expressed protein -
12 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
13 Sobic.001G175800 expressed protein -
14 Sobic.003G440800 vacuolar protein sorting 55 family protein, putative, expressed -
15 Sobic.007G166100 no apical meristem protein, putative, expressed -
16 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4
17 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
18 Sobic.010G091900 -(PubMedID : 26320239)@HVA22, putative, expressed -
19 Sobic.010G000900 spotted leaf 11, putative, expressed -
20 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -


Gene co-expression network
sample Sobic001G314500 Sobic001G314500 Sobic006G212100 Sobic006G212100 Sobic001G314500--Sobic006G212100 Sobic009G198500 Sobic009G198500 Sobic001G314500--Sobic009G198500 Sobic007G168600 Sobic007G168600 Sobic001G314500--Sobic007G168600 Sobic001G388200 Sobic001G388200 Sobic001G314500--Sobic001G388200 Sobic006G232200 Sobic006G232200 Sobic001G314500--Sobic006G232200 Sobic001G054200 Sobic001G054200 Sobic001G314500--Sobic001G054200 Sobic009G004600 Sobic009G004600 Sobic001G314500--Sobic009G004600 Sobic010G205300 Sobic010G205300 Sobic001G314500--Sobic010G205300 Sobic003G217400 Sobic003G217400 Sobic001G314500--Sobic003G217400 Sobic006G212100--Sobic001G054200 Sobic006G212100--Sobic009G198500 Sobic006G212100--Sobic001G314500 Sobic006G263900 Sobic006G263900 Sobic006G212100--Sobic006G263900 Sobic002G400000 Sobic002G400000 Sobic006G212100--Sobic002G400000 Sobic006G212100--Sobic007G168600 Sobic009G174900 Sobic009G174900 Sobic006G212100--Sobic009G174900 Sobic010G083700 Sobic010G083700 Sobic006G212100--Sobic010G083700 Sobic001G005900 Sobic001G005900 Sobic006G212100--Sobic001G005900 Sobic004G272300 Sobic004G272300 Sobic009G198500--Sobic004G272300 Sobic003G124800 Sobic003G124800 Sobic009G198500--Sobic003G124800 Sobic009G198500--Sobic002G400000 Sobic009G198500--Sobic007G168600 Sobic002G078400 Sobic002G078400 Sobic009G198500--Sobic002G078400 Sobic004G300900 Sobic004G300900 Sobic009G198500--Sobic004G300900 Sobic009G198500--Sobic001G005900 Sobic007G096700 Sobic007G096700 Sobic009G198500--Sobic007G096700 Sobic009G198500--Sobic006G212100 Sobic007G168600--Sobic002G400000 Sobic007G168600--Sobic009G198500 Sobic004G086600 Sobic004G086600 Sobic007G168600--Sobic004G086600 Sobic001G502200 Sobic001G502200 Sobic007G168600--Sobic001G502200 Sobic003G077900 Sobic003G077900 Sobic007G168600--Sobic003G077900 Sobic007G168600--Sobic010G205300 Sobic007G168600--Sobic003G124800 Sobic001G461900 Sobic001G461900 Sobic007G168600--Sobic001G461900 Sobic007G168600--Sobic001G314500 Sobic003G349300 Sobic003G349300 Sobic001G388200--Sobic003G349300 Sobic001G388200--Sobic006G232200 Sobic009G135600 Sobic009G135600 Sobic001G388200--Sobic009G135600 Sobic001G388200--Sobic010G083700 Sobic002G281300 Sobic002G281300 Sobic001G388200--Sobic002G281300 Sobic001G388200--Sobic001G054200 Sobic010G000900 Sobic010G000900 Sobic001G388200--Sobic010G000900 Sobic001G388200--Sobic001G314500 Sobic003G261400 Sobic003G261400 Sobic001G388200--Sobic003G261400 Sobic006G232200--Sobic003G124800 Sobic007G045600 Sobic007G045600 Sobic006G232200--Sobic007G045600 Sobic001G143300 Sobic001G143300 Sobic006G232200--Sobic001G143300 Sobic006G232200--Sobic009G198500 Sobic004G130100 Sobic004G130100 Sobic006G232200--Sobic004G130100 Sobic003G323600 Sobic003G323600 Sobic006G232200--Sobic003G323600 Sobic006G232200--Sobic001G054200 Sobic008G161800 Sobic008G161800 Sobic006G232200--Sobic008G161800 Sobic006G232200--Sobic001G388200 Sobic001G054200--Sobic010G083700 Sobic001G054200--Sobic006G263900 Sobic001G054200--Sobic006G212100 Sobic007G186300 Sobic007G186300 Sobic001G054200--Sobic007G186300 Sobic004G293700 Sobic004G293700 Sobic001G054200--Sobic004G293700 Sobic009G246950 Sobic009G246950 Sobic001G054200--Sobic009G246950 Sobic004G079100 Sobic004G079100 Sobic001G054200--Sobic004G079100 Sobic001G054200--Sobic006G232200 Sobic003G115800 Sobic003G115800 Sobic001G054200--Sobic003G115800 Sobic009G004600--Sobic002G400000 Sobic004G356900 Sobic004G356900 Sobic009G004600--Sobic004G356900 Sobic009G004600--Sobic003G217400 Sobic009G004600--Sobic009G198500 Sobic001G263000 Sobic001G263000 Sobic009G004600--Sobic001G263000 Sobic009G004600--Sobic001G314500 Sobic002G113900 Sobic002G113900 Sobic009G004600--Sobic002G113900 Sobic009G004600--Sobic010G205300 Sobic009G004600--Sobic007G168600 Sobic004G232800 Sobic004G232800 Sobic010G205300--Sobic004G232800 Sobic010G205300--Sobic003G349300 Sobic010G205300--Sobic007G168600 Sobic010G205300--Sobic001G502200 Sobic010G205300--Sobic002G281300 Sobic010G205300--Sobic004G356900 Sobic010G205300--Sobic003G261400 Sobic004G194900 Sobic004G194900 Sobic010G205300--Sobic004G194900 Sobic001G067900 Sobic001G067900 Sobic010G205300--Sobic001G067900 Sobic003G261500 Sobic003G261500 Sobic003G217400--Sobic003G261500 Sobic003G217400--Sobic003G077900 Sobic003G217400--Sobic009G004600 Sobic003G217400--Sobic002G400000 Sobic003G217400--Sobic001G314500 Sobic003G217400--Sobic010G000900 Sobic003G217400--Sobic009G198500 Sobic001G051200 Sobic001G051200 Sobic003G217400--Sobic001G051200 Sobic003G217400--Sobic007G168600
Octagon: transcription factors


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